delocalizer Goto Github PK

adamajava

beacon-v2-models

Models that leverage the Beacon Framework v2

beacon2_data_validator

Validate JSON data files against the beacon v2 data model.

beacon_v2_test_data

Beacon v2 format data from a publicly available dataset

bioconda-recipes

Conda recipes for the bioconda channel.

cpython

The Python programming language

cromwell

Workflow Execution Engine using WDL

cutstash

Store trimmed adapters in FASTQ sequence id description.

ega-download-client

A basic Python-based EGA download client

ega_metadata

An incomplete set of subpackages of the private `graflipy` package, for instructional purposes only

empire

JPA implementation for RDF

genologics-lims-qcmg-api-python-tools

This Python module contains commonly used functions to access the GenoLogics LIMS Rapid Scripting REST API. The first submission is glsapi.py. It can be used when starting to work with the GenoLogics LIMS API in Python. It was written by Conrad Leonard, PhD at the Queensland Centre for Medical Genomics, Institute for Molecular Bioscience in the University of Queensland and supported by other interested script writers using the GenoLogics LIMS products.

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

mumbai

Faster position-based slice or lookup on multiple bams

nextflow-s3fs

An S3 File System Provider for Java 7

pbspro

An HPC workload manager and job scheduler for desktops, clusters, and clouds.

pbspy

Lightweight PBS job submission and monitoring

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

pinto

Pinto: A lightweight framework for mapping Java Beans into RDF and back again

pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

python-novice-gapminder

Introduction to Python for non-programmers using gapminder data

qasim

Simulate mutations, fragment generation and paired-end HTS reads on diploid genomes

quip_classification

r-novice-gapminder

Introduction to R for non-programmers using gapminder data.

rdflib

RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.

stardog-groovy

streammd

Single-pass probabilistic duplicate marking of alignments with a Bloom filter.

styles

Official repository for Citation Style Language (CSL) citation styles.

tutorial

Code review tutorial exercises

velocyto.py

RNA velocity estimation in Python