dawei1203 Goto Github PK

amfinder

The AMFinder suite contains Python scripts that enable high-throughput annotation of mycorrhizal structures from pictures of ink-stained plant roots, as well as a fully-featured browser for manual curation and heatmap generation.

ballgown

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

beautiful-visualization-with-r

《R语言数据可视化之美》配套代码

bio_code

this project is content about my bioinformation analysis code .it may have R，Shell，Python.

bioinfocontainers

Various Singularity recipes I've used to generate containers

camoco

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.

candihap

A haplotype analysis toolkit for natural variation study.

centos

chronoroot

chronorootcontrol

Web interface controling ChronoRoot image acquisition module

co-expression-analysis-using-camoco

Co-expression analysis using Camoco

cob

The gene CO-expression Browser

cytoscape-tutorials

Collection of modular Cytoscape tutorials for online presentation using reveal.js

dirt

Digital Imaging of Root Traits

ea-utils

Automatically exported from code.google.com/p/ea-utils

evalsvcallers

Evaluate the performances (precision and recall) of structural variation (SV) callers

fastqtl

Enhanced version of the FastQTL QTL mapper

faststructure

A variational framework for inferring population structure from SNP genotype data.

focus

FOCUS: Fine-mapping Of CaUsal gene Sets

gatk

Official code repository for GATK versions 4 and up

gecs

gemma

Genome-wide Efficient Mixed Model Association

genomics_general

General tools for genomic analyses.

gensel

Anything related to GenSel program from Iowa State

ggbiplot

A biplot based on ggplot2

gtdbtk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

gwas_flow

GPU accelerated GWAS framework based on TensorFlow

hapbin

Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)