Ed Davis's Projects
Another Gtf/Gff Analysis Toolkit
A console-based alignment viewer
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Example datasets for automlsa2 script.
Rapid & standardized annotation of bacterial genomes & plasmids
Basic Sequence Taxonomy Annotator
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
A monitor of resources
Gene cluster comparison figure generator
Analysis for the Davis et al 2022 PLOS ZAM study.
Robust Aitchison PCA from sparse count data
Simplified shell for giving live demos
Rapid comparison and dereplication of genomes
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Eukaryotic Genome Annotation Pipeline
Download assembly files from NCBI
:octocat: git and git flow cheat sheet
Hypoxic barrier hypothesis manuscript data analysis
DNA序列比对结果 可视化展示工具
Large scale Blast Score Ratio (BSR) analysis
MITObim - mitochondrial baiting and iterative mapping
Acetone monooxygenase (SAR11_0845) homolog analysis using Tara metatranscriptome data
Swift Accel-Amplicon primer trimming tool for fast alignment-based primer trimming
[WORKING PROTOTYPE] Generate QR code easily for free - QR Code Generation as a Service
A minimal ggplot2 theme with an accessible discrete color palette.