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Name: Dave Carlson
Type: User
Bio: I use bioinformatics to do research in plant genomics, phylogenetics, and transposable element evolution.
Twitter: Dave_E_Carlson
Name: Dave Carlson
Type: User
Bio: I use bioinformatics to do research in plant genomics, phylogenetics, and transposable element evolution.
Twitter: Dave_E_Carlson
Singularity recipe for AlphaFold
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
Detecting natural selection from population-based genetic data
Batch Connect - OSC QGIS
A Brython editor for entry-level python classes.
Repo for housings scripts and data for Oenothera comparative transcriptomics project
Config files used to define parameters specific to compute environments at different Institutions
A cookiecutter template for Snakemake workflows
This Snakemake pipeline implements the GATK best-practices workflow
Python scripts for working with fasta files and other common bioinformatics formats
Pipeline to fetch metadata and raw FastQ files from public and private databases
A collection of various HPC monitoring utility scripts
Repository to host tool-specific module files for the Nextflow DSL2 community!
An ever-expanding list of bioinformatics software that can be parallelized across multiple compute nodes in an HPC environment
A nextflow pipeline for de novo transcriptome assembly
Miscellaneous scripts used for conducting population genomics analysis from Oenothera data
PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.
RNA-Seq Saturation Curve
RNA-seq workflow using STAR and DESeq2
An educational variant calling example with short read Illumina data using the SARS-CoV2 genome
The latex template for Stony Brook University Ph.D. and MS Thesis
Misc. scripts for bioinformatics
Scripts for running and testing the SHMprep IG-seq read processing tool.
A snakemake variant calling pipeline using Bcftools
A snakemake pipeline for variant calling with GATK
A snakemake pipeline for using Trinotate to annotate multiple transcriptomes assembled with Trinity
This is the development home of the Snakemake wrapper repository, see
Differential Gene Expression with Snakemake
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.