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2019-03-09_software-carpentry-demo

This is a GitHub and git teaching demo exercise

alphashapes

A test repository for alpha shapes python scripts

batchusermask

ImageJ Macro to Automate Manual Region Masking

cellprofiler

An open-source application for biological image analysis

cheatsheets

Quick lookup documents for commonly used tools

dc_localplan

An open source analysis of sustainability assessment data for the March 2021 Dorset Council Local Plan Draft.

droplet_frap

Droplet FRAP macros

fcsparser

a python parser for reading fcs files supprorting fcs 2.0, 3.0, 3.1

flowcytometrytools

A python package for visualization and analysis of high-throughput flow cytometry data

gitgoing

Get going with contributing to open source software

hello-github-actions

ice-cream

This protocol is to make ice cream when you work from home

ijm_test_repo

A tiny repo to check if .ijm files are recognised by linguist.

imagej-macro-for-cellular-intensity-analysis

These macros were generated to analyze total cell intensity from fluorescence images in ImageJ

language-ijm

Syntax Highlighter for ImageJ Macros

leisure-time-recipe

This folder contains recipes for some snacks I tried during my leisure time.

linguist

Language Savant. If your repository's language is being reported incorrectly, send us a pull request!

localcider

localCIDER - sequence analysis tool for disordered protein sequences

mtk_primer_generator

Automagically ✨ generate primers for Golden Gate cloning using the Mammalian Cloning Toolkit (MTK)

nlpmeetup

Notes for UCSF NLPMeetup

notebooks

Jupyter notebooks for CellProfiler and friends

proteins.r

My initial attempts to analyse protein sequences in R

pyfrap

PyFRAP: A Python based FRAP analysis tool box

rprotscale

plotting expasy protscale data

simplebio

A starter template for beginners.

telo-fish_image_analysis

An attempt at replacing MetaMorph microscopy and image analysis software functionality with open-source, automated solutions.

uc_insurers