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Tien-chen (Dennis) Lin's Projects

awesome-single-cell icon awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bioinformatics_online icon bioinformatics_online

Resource list and preparation instructions for online learning and teaching for Bioinformatics

brainformatics icon brainformatics

This Repository is the collection of developing tools and programs potentially used for analyzing single cell NGS data in BI-Harvard Human Brain Project

brainsforpublication icon brainsforpublication

Code and documentation for the Brains for Publication proposal for the 2016 OHBM Hackathon

cancertypeprediction icon cancertypeprediction

This is the repository for paper titled as "Convolutional neural network models for cancer type prediction based on gene expression".

ctv-anomalydetection icon ctv-anomalydetection

CRAN Task View: Anomaly Detection with R 🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛍️🛒🛒

dca icon dca

Deep count autoencoder for denoising scRNA-seq data

honeybadger icon honeybadger

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

liger icon liger

Lightweight Iterative Gene set Enrichment in R

modeltime icon modeltime

Modeltime unlocks time series forecast models and machine learning in one framework

onboarding icon onboarding

This repository contains the onboarding resources and exercises that are recommended for when you join the Whitaker Lab.

perturbseq_gi icon perturbseq_gi

Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"

rnaseq_tutorial icon rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rrr icon rrr

R package for Reduced Rank Regression

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