danlurie Goto Github PK

adaptive-thresholding

Combination of Gamma Gaussian Mixture model and topological FDR for thresholding fMRI statistical maps.

avalanche

bctpy

brain connectivity toolbox for python

bdpdb

Brain Damage Patient Data Browser (BDPDB)

bldb

Brain Lesion Data Browser

brainhacking-101

A repository containing tutorials and other materials related to Brainhacking 101.

brainsmash

Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity

c-pac

Configurable Pipeline for the Analysis of Connectomes

cluster_roi

Python script to perform the spatially constrained parcellation of funcitonal MRI data as described in Craddock et al., Human Brain Mapp., 33 (9) 2012

cpac_paper

Manuscript describing CPAC

cra_network_analysis

An attempt to relate semantic network properties to the difficulty of Compound Remote Associate problems.

ctbs_lag

cwas-paper

Scripts to analyze data and generate figures for the CWAS paper

denoiser

Nuisance removal tool for fMRI data

despolab_lesion

Scripts for organizing and preprocessing MRI data from our lesion patient database.

dicom_scraper

Quickly pull key scan parameters from DICOM headers.

distractwm

Kiyonaga, Lurie et al in prep

easy_parallel_python

Example of parallel multiprocessing in Python

fc_tensor

Basic code implementing the "spatio-temporal correlation tensor" (aka functional connectivity tensor) method from Ding et al. 2013

flask-appbuilder

Simple and rapid application development framework, built on top of Flask. includes detailed security, auto CRUD generation for your models, google charts and much more. Demo (login with guest/welcome) - http://flaskappbuilder.pythonanywhere.com/

fmriprep

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

global2017

webpage for Brainhack Global 2017

heartrate

heudiconv

little helper to ease DICOM conversion to ready-to-share folder with heuristics

heudiconv-joss-paper

Repository to prepare HeuDiConv paper

lag_maps

Cross-correlation lag maps for fMRI data.

lurie_kessler_2019

Code for creating figures in Lurie, Kessler, et al. 2019

mri_mask_metrics

A tool to assist in creating a whole-brain group mask for very large MRI data sets.

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

ndmg

NeuroData's MRI Graphs (ndmg) - structural connectome estimation package and pipeline