daniel-liu-c0deb0t Goto Github PK

2020

Student submissions for the WWDC 2020 Swift Student Challenge

3d-neural-network-adversarial-attacks

Research on adversarial attacks and defenses for deep neural network 3D point cloud classifiers like PointNet and PointNet++.

9s

Basic Rust program that uses multiple threads to send and receive pings.

adaptivebandbench

Benchmark on adaptive banded algorithm

adversarial-point-perturbations-on-3d-objects

New distributional and shape attacks on neural networks that process 3D point cloud data.

antisequence

Rust library for processing sequencing reads.

arewebioyet.github.io

Rust in bioinformatics and computational biology

awesome-rust

A curated list of Rust code and resources.

best

Bam Error Stats Tool (best): analysis of error types in aligned reads.

block-aligner

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

blog

My blog.

cloudflare-2020-general-engineering-assignment

cloudflare-2020-systems-engineering-assignment

competitive-programming-club-notes

PDF notes written for the competitive programming club.

consulting

Consulting website.

cute-nucleotides

Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.

daniel-liu-c0deb0t

daniel-liu-c0deb0t.github.io

My personal website.

diff-align

Differentiable position-specific probability matrix alignment.

diff-bench-paper

Edits to the supplementary data of the difference recurrence alignment paper.

dlb-kmer-sampling

Optimal distance lower bound k-mer sampling.

dotfiles

Linux dot files.

edlib-rs

rust binding to edlib

enigmamachinesim

Enigma machine simulator written in Java. This is different from a real enigma machine as it supports multiple wheels and a larger alphabet size, along with other adjustable settings.

fastqparse

Java toolkit for multi-threaded preprocessing of extremely large .fastq files in the GBS Pipeline by demultiplexing, filtering, and trimming sequenced DNA.

flamanalysis

Data Analysis For FLAM-Seq Third Generation RNA Sequencing

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

frfr

Parallelized Ukkonen/Myer's edit distance algorithm, fr fr.

gccontent-benchmark

Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)

general-algorithms

A variety of algorithm implementations and short classes, mostly for competitive programming and machine learning.