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Meyer Lab's Projects

avalanche_model icon avalanche_model

Repo for building spiking networks for modelling avalanche dynamics.

cellpose icon cellpose

a generalist algorithm for cellular segmentation

criticality icon criticality

Repo contains code for algorithms which calculate the spatiotemporal cascade of activity and measures critical statistics.

development_network_model icon development_network_model

Repo for simulating spiking network models over development to understand mechanisms shaping self organising criticality in the brain.

empirical_dynamic_modelling icon empirical_dynamic_modelling

Repo for running empirical dynamic modelling techniques on data - using lagged coordinate embedding to perform simplex projection and convergent cross mapping (CCM) - techniques which can account for non-linear dynamics to reconstruct attractors from time series data.

ontogenyofhunting_pub icon ontogenyofhunting_pub

Code associated with the article "Learning steers the ontogeny of an efficient hunting sequence in zebrafish larva."

patchwarp icon patchwarp

Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.

rec2track_qt icon rec2track_qt

Tool for behavioural recording and stimuli presentation during 2photon imaging

seizure_detection icon seizure_detection

This repo is used for detecting the timecourse of seizure events in generalised and focal seizures in larval zebrafish PTZ data.

seizure_dynamics icon seizure_dynamics

Repo for calculating eigenspectra, population smoothness and velocity in spontaneous dynamics.

sfn19 icon sfn19

Dynamic Poster for SfN 2019

stytra icon stytra

A modular package to control stimulation and track behaviour

suite2p icon suite2p

cell detection in calcium imaging recordings

tailtracker icon tailtracker

Want to track the tail motion from the Zfish mounted on the 2p scope? Here is an application got offline tracking for the 2p scope setup

vcortex_encoding icon vcortex_encoding

Repo for analysing dimensionality of spontaneous and evoked activity, and encoding of stimuli in the layers of the visual cortex, using dimensionality reduction, logistic and linear regression.

zebrafishtrack_cam icon zebrafishtrack_cam

Controls the camera on the behavioural rig, alllows triggering when larvae appear in ROI, and recording for fixed duration (timeout def10min)

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