Error in `centrifuge-class': munmap_chunk(): invalid pointer about centrifuge HOT 2 CLOSED

I think we might have fixed this issue, and the fix is incorporated in the master branch. Would it be possible for you to try the GitHub version?

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Hi there,
I would like to receive some help. Our system administrator tried to install centrifuge and got Error 1 and Error 2. Please see the details of the errors below:

/xxx/xxx/centrifuge/indices@node12> make p+h+v
Making: p+h+v: p+h+v
make -f Makefile IDX_NAME=p+h+v
make[1]: Entering directory /misc/xxx/software/centrifuge/indices' mkdir -p reference-sequences [[ -d tmp_p+h+v ]] && rm -rf tmp_p+h+v; mkdir -p tmp_p+h+v Downloading and dust-masking archaea centrifuge-download -o tmp_p+h+v -m -d "archaea" -P 1 refseq > \ tmp_p+h+v/all-archaea.map Downloading ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/archaea/assembly_summary.txt ... Downloading 224 archaea genomes at assembly level Complete Genome ... (will take a while) Progress : [####------------------------------------] 12% 28/224 Progress : [########################################] 100% 224/224 cat tmp_p+h+v/archaea/*.fna > reference-sequences/all-archaea.fna.tmp && mv reference-sequences/all-archaea.fna.tmp reference-sequences/all-archaea.fna mv tmp_p+h+v/all-archaea.map reference-sequences/all-archaea.map rm -rf tmp_p+h+v [[ -d tmp_p+h+v ]] && rm -rf tmp_p+h+v; mkdir -p tmp_p+h+v Downloading and dust-masking bacteria centrifuge-download -o tmp_p+h+v -m -d "bacteria" -P 1 refseq > \ tmp_p+h+v/all-bacteria.map Downloading ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/assembly_summary.txt ... Downloading 6498 bacteria genomes at assembly level Complete Genome ... (will take a while) Progress : [----------------------------------------] 0% 64/6498 Progress : [########################################] 100% 6498/6498 cat tmp_p+h+v/bacteria/*.fna > reference-sequences/all-bacteria.fna.tmp && mv reference-sequences/all-bacteria.fna.tmp reference-sequences/all-bacteria.fna mv tmp_p+h+v/all-bacteria.map reference-sequences/all-bacteria.map rm -rf tmp_p+h+v [[ -d tmp_p+h+v ]] && rm -rf tmp_p+h+v; mkdir -p tmp_p+h+v Downloading and dust-masking viral-any_level centrifuge-download -o tmp_p+h+v -m -d "viral-any_level" -P 1 refseq > \ tmp_p+h+v/all-viral-any_level.map viral-any_level is not a valid domain - use one of the following: archaea bacteria fungi invertebrate plant protozoa unknown vertebrate_mammalian vertebrate_other viral make[1]: *** [reference-sequences/all-viral-any_level.fna] Error 1 make[1]: Leaving directory /misc/xxx/software/centrifuge/indices'
make: *** [p+h+v] Error 2

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