(ERR): centrifuge-class exited with value 1 about centrifuge HOT 3 OPEN

Anyone? @fbreitwieser @bioinfonm @DNAsaurus

Still getting the same error after re-generating db. db was generated with bacterial, archaeal, eukaryotic and viral genomes and no output errors from build.
command was:

./centrifuge/centrifuge-build -p 8 --conversion-table centrifuge_analysis/seqid2taxid.map --taxonomy-tree centrifuge_analysis/taxonomy/nodes.dmp --name-table centrifuge_analysis/taxonomy/names.dmp centrifuge_analysis/input-sequences.fna /ibers/ernie/scratch/ans74/centrifuge_final_database_nobmax/abv

from centrifuge.

What version of centrifuge are you running? Is it the latest one?

How big is the database you built? And the raw fasta file size?

Do you have htop installed so you can track how the processors and memory are being used?

Catching a flight soon so I'll be slow to respond.

from centrifuge.

I am having the same problem. Anyone knows the solution?

Working with a database I created using bacterial, archaeal and fungal genomes, I am now getting the following trying to run it with some reads:

Error reading _ebwt[] array: 1352, 7627660928
Error: Encountered internal Centrifuge exception (#1)
Command: /usr/local/bin/centrifuge-class --wrapper basic-0 -S /mnt/e/reads_output.txt --report-file /mnt/e/reads_report.tsv -f -p 8 -U /mnt/e/reads.fasta /mnt/e/centrifuge_database/abv
(ERR): centrifuge-class exited with value 1

Not sure what to do here. Any help @infphilo ?

from centrifuge.