Daniel Straub's Projects
16S rRNA amplicon sequencing analysis workflow using QIIME2
Simple bacterial assembly and annotation pipeline
Assembly-free functional metagenomics pipeline with KneadData and HUMAnN3
Assembly and binning of metagenomes
Repository to host tool-specific module files for the Nextflow DSL2 community!
Config files used to define parameters specific to compute environments at different Institutions
A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
Multipe region amplicon sequencing analysis with SMURF via Sidle in QIIME2
Downstream differential gene expression analysis with DESeq2 package
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
Test data to be used for automated testing with the nf-core pipelines
Ansible playbooks for QIIME 2 environments