Comments (6)
AlazzawiAdil
commented on August 27, 2024
Hi I tried to used RELION through EMAN2 and I got the following error, any suggestions? please
Converting EMAN2 Files to Formats Compatible with RELION
Traceback (most recent call last):
File "/home/adil/EMAN2/bin/e2refinetorelion2d.py", line 260, in
temp=EMData("sets/"+db,k)
File "/home/adil/EMAN2/lib/python2.7/site-packages/EMAN2db.py", line 386, in db_emd_init
self.__initc(*parms)
RuntimeError: ImageFormatException at /home/eman2/anaconda2/conda-bld/eman2_1569858012581/work/libEM/emutil.cpp:515: 'invalid image type' caught
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sludtke42
commented on August 27, 2024
Hi. Support is provided through:
http://groups.google.com/group/eman2 <http://groups.google.com/group/eman2>
not GitHub.
When you post, please include the full output of e2version.py, and without giving the command you were running it's difficult to help you debug...
--------------------------------------------------------------------------------------
Steven Ludtke, Ph.D. <[email protected]> Baylor College of Medicine
Charles C. Bell Jr., Professor of Structural Biology
Dept. of Biochemistry and Molecular Biology (www.bcm.edu/biochem)
Academic Director, CryoEM Core (cryoem.bcm.edu)
Co-Director CIBR Center (www.bcm.edu/research/cibr)
… On Oct 27, 2020, at 10:35 AM, Adil Al-Azzawi ***@***.***> wrote:
Hi I tried to used RELION through EMAN2 and I got the following error, any suggestions? please
Converting EMAN2 Files to Formats Compatible with RELION
Traceback (most recent call last):
File "/home/adil/EMAN2/bin/e2refinetorelion2d.py", line 260, in
temp=EMData("sets/"+db,k)
File "/home/adil/EMAN2/lib/python2.7/site-packages/EMAN2db.py", line 386, in db_emd_init
self.__initc(*parms)
RuntimeError: ImageFormatException at /home/eman2/anaconda2/conda-bld/eman2_1569858012581/work/libEM/emutil.cpp:515: 'invalid image type' caught
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AlazzawiAdil
commented on August 27, 2024
thank you so much for your response, I have some difficulties to access to the group the command line that I'm using is shown below:
e2refinetorelion2d.py sets/all.lst --numclasses=20 --numiter=8 --regparam=1.0 --particle_mask_diameter=-1.0 --offsetrange=10.0 --offsetstep=2.0 --threads=64 --verbosity=1
I tried to used both data veriosn hd5 and MRCS when I build my set but both are not working, thanks for your help
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AlazzawiAdil
commented on August 27, 2024
I'm using EMAN 2.3.1
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sludtke42
commented on August 27, 2024
Ok, still need the full output from e2version.py.
Also need to see the output of:
ls -al
ls -al sets
ls -al particles
in the project folder.
Please note that the file extension is .hdf not .hd5.
--------------------------------------------------------------------------------------
Steven Ludtke, Ph.D. <[email protected]> Baylor College of Medicine
Charles C. Bell Jr., Professor of Structural Biology
Dept. of Biochemistry and Molecular Biology (www.bcm.edu/biochem)
Academic Director, CryoEM Core (cryoem.bcm.edu)
Co-Director CIBR Center (www.bcm.edu/research/cibr)
… On Oct 27, 2020, at 10:55 AM, Adil Al-Azzawi ***@***.***> wrote:
thank you so much for your response, I have some difficulties to access to the group the command line that I'm using is shown below:
e2refinetorelion2d.py sets/all.lst --numclasses=20 --numiter=8 --regparam=1.0 --particle_mask_diameter=-1.0 --offsetrange=10.0 --offsetstep=2.0 --threads=64 --verbosity=1
I tried to used both data veriosn hd5 and MRCS when I build my set but both are not working, thanks for your help
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AlazzawiAdil
commented on August 27, 2024
Thanks for your response,
e2version.py output is:
EMAN 2.31 final (GITHUB: 2019-09-30 10:41 - commit: 194df95 )
Your EMAN2 is running on: Linux-5.4.0-52-generic-x86_64-with-debian-buster-sid 5.4.0-52-generic
Your Python version is: 2.7.14
ls -all output is:
total 72040
drwxr-xr-x 22 adil adil 20480 Oct 27 11:03 .
drwxr-xr-x 31 adil adil 4096 Oct 18 19:32 ..
-rwxrwxr-x 1 adil adil 104 Oct 18 19:32 2to3
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-rwxrwxr-x 1 adil adil 1136480 Aug 24 2018 assistant
-rw-r--r-- 1 adil adil 86283 Oct 27 10:25 .browsercache.json
-rwxrwxr-x 1 adil adil 197984 Sep 14 2018 bsdcat
-rwxrwxr-x 1 adil adil 768496 Sep 14 2018 bsdcpio
-rwxrwxr-x 1 adil adil 804944 Sep 14 2018 bsdtar
-rwxr-xr-x 1 adil adil 110256 Jul 15 2019 bunzip2
-rwxr-xr-x 1 adil adil 110256 Jul 15 2019 bzcat
lrwxrwxrwx 1 adil adil 6 Jul 15 2019 bzcmp -> bzdiff
-rwxr-xr-x 1 adil adil 2140 Jul 15 2019 bzdiff
lrwxrwxrwx 1 adil adil 6 Jul 15 2019 bzegrep -> bzgrep
lrwxrwxrwx 1 adil adil 6 Jul 15 2019 bzfgrep -> bzgrep
-rwxr-xr-x 1 adil adil 2054 Jul 15 2019 bzgrep
-rwxr-xr-x 1 adil adil 110256 Jul 15 2019 bzip2
-rwxr-xr-x 1 adil adil 21064 Jul 15 2019 bzip2recover
lrwxrwxrwx 1 adil adil 6 Jul 15 2019 bzless -> bzmore
-rwxr-xr-x 1 adil adil 1259 Jul 15 2019 bzmore
-rwxrwxr-x 1 adil adil 35768 Aug 24 2018 canbusutil
lrwxrwxrwx 1 adil adil 3 Nov 28 2018 captoinfo -> tic
-rwxr-xr-x 1 adil adil 236 Oct 18 19:24 chardetect
-rwxrwxr-x 1 adil adil 39552 Nov 8 2017 cjpeg
-rwxr-xr-x 1 adil adil 14296 Nov 28 2018 clear
-rwxr-xr-x 1 adil adil 517 Oct 18 19:24 conda
-rwxr-xr-x 1 adil adil 240 Oct 18 19:24 conda-build
-rwxr-xr-x 1 adil adil 242 Oct 18 19:24 conda-convert
-rwxr-xr-x 1 adil adil 240 Oct 18 19:24 conda-debug
-rwxr-xr-x 1 adil adil 242 Oct 18 19:24 conda-develop
-rwxr-xr-x 1 adil adil 154 Oct 18 19:24 conda-env
-rwxr-xr-x 1 adil adil 240 Oct 18 19:24 conda-index
-rwxr-xr-x 1 adil adil 242 Oct 18 19:24 conda-inspect
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-rwxr-xr-x 1 adil adil 241 Oct 18 19:24 conda-render
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-rwxrwxr-x 1 adil adil 5160 Oct 18 19:32 c_rehash
-rwxr-xr-x 1 adil adil 8416 Jun 3 2016 db_archive
-rwxr-xr-x 1 adil adil 11088 Jun 3 2016 db_checkpoint
-rwxr-xr-x 1 adil adil 11096 Jun 3 2016 db_deadlock
-rwxr-xr-x 1 adil adil 13280 Jun 3 2016 db_dump
-rwxr-xr-x 1 adil adil 13864 Jun 3 2016 db_hotbackup
-rwxr-xr-x 1 adil adil 30696 Jun 3 2016 db_load
-rwxr-xr-x 1 adil adil 11072 Jun 3 2016 db_log_verify
-rwxr-xr-x 1 adil adil 37024 Jun 3 2016 db_printlog
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-rwxr-xr-x 1 adil adil 11272 Jun 3 2016 db_stat
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-rwxr-xr-x 1 adil adil 9288 Jun 3 2016 db_upgrade
-rwxrwxr-x 1 adil adil 20920 Oct 14 13:45 dbus-cleanup-sockets
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-rwxrwxr-x 1 adil adil 35336 Oct 14 13:45 dbus-test-tool
-rwxrwxr-x 1 adil adil 21232 Oct 14 13:45 dbus-update-activation-environment
-rwxrwxr-x 1 adil adil 20400 Oct 14 13:45 dbus-uuidgen
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-rwxr-xr-x 1 adil adil 6313 Sep 21 2019 e2reliontoeman.py
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-rwxr-xr-x 1 adil adil 5382 Sep 21 2019 e2spt_extractfromseg.py
-rwxr-xr-x 1 adil adil 23802 Sep 27 2019 e2spt_extract.py
-rwxr-xr-x 1 adil adil 3057 Sep 21 2019 e2spt_fftamp.py
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-rwxr-xr-x 1 adil adil 11735 Sep 21 2019 e2spt_intrafsc.py
-rwxr-xr-x 1 adil adil 38526 Sep 21 2019 e2spt_isr.py
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-rwxr-xr-x 1 adil adil 11142 Sep 21 2019 e2spt_pcasplit.py
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-rwxr-xr-x 1 adil adil 27113 Sep 21 2019 e2spt_resolutionplot.py
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-rwxr-xr-x 1 adil adil 15221 Sep 21 2019 e2tomo_eval.py
-rwxr-xr-x 1 adil adil 52167 Sep 21 2019 e2tomogram.py
-rwxr-xr-x 1 adil adil 21158 Sep 21 2019 e2tomo_icongpu.py
-rwxr-xr-x 1 adil adil 21698 Sep 21 2019 e2tomopreproc.py
-rwxr-xr-x 1 adil adil 5523 Sep 21 2019 e2tomoresolution.py
-rwxr-xr-x 1 adil adil 9933 Sep 21 2019 e2tomoseg_buildtrainset.py
-rwxr-xr-x 1 adil adil 30474 Sep 21 2019 e2tomoseg_convnet.py
-rwxr-xr-x 1 adil adil 5089 Sep 21 2019 e2tomoseg_preproc.py
-rwxr-xr-x 1 adil adil 7590 Sep 21 2019 e2tomo_showali.py
-rwxr-xr-x 1 adil adil 7969 Sep 21 2019 e2tomo_stackframes.py
-rwxr-xr-x 1 adil adil 20457 Sep 21 2019 e2tomo_tiltstacker.py
-rwxr-xr-x 1 adil adil 26293 Sep 21 2019 e2tvrecon.py
-rwxr-xr-x 1 adil adil 2422 Sep 21 2019 e2unwrap3d.py
-rwxr-xr-x 1 adil adil 2603 Sep 21 2019 e2version.py
-rwxr-xr-x 1 adil adil 245 Oct 18 19:24 easy_install
-rw-r--r-- 1 adil adil 90931 Oct 27 11:02 .eman2log.txt
-rwxr-xr-x 1 adil adil 2881 Sep 21 2019 eman2.py
-rw-r--r-- 1 adil adil 159 Oct 27 11:03 .eman2settings.json
-rwxrwxr-x 1 adil adil 769 Oct 18 19:32 f2py
-rwxrwxr-x 1 adil adil 34496 Aug 23 2018 fax2ps
-rwxrwxr-x 1 adil adil 26072 Aug 23 2018 fax2tiff
-rwxrwxr-x 1 adil adil 25576 May 25 2018 fc-cache
-rwxrwxr-x 1 adil adil 21104 May 25 2018 fc-cat
-rwxrwxr-x 1 adil adil 16008 May 25 2018 fc-conflist
-rwxrwxr-x 1 adil adil 16368 May 25 2018 fc-list
-rwxrwxr-x 1 adil adil 20808 May 25 2018 fc-match
-rwxrwxr-x 1 adil adil 16344 May 25 2018 fc-pattern
-rwxrwxr-x 1 adil adil 16184 May 25 2018 fc-query
-rwxrwxr-x 1 adil adil 16392 May 25 2018 fc-scan
-rwxrwxr-x 1 adil adil 20576 May 25 2018 fc-validate
-rwxrwxr-x 1 adil adil 2286840 Jan 15 2020 fftwf-wisdom
-rwxrwxr-x 1 adil adil 999512 Jan 15 2020 fftwl-wisdom
-rwxrwxr-x 1 adil adil 2228528 Jan 15 2020 fftw-wisdom
-rwxrwxr-x 1 adil adil 2291 Jan 15 2020 fftw-wisdom-to-conf
-rw-r--r-- 1 adil adil 383 Oct 26 12:11 filtertool_default.txt
-rwxrwxr-x 1 adil adil 6344 Jun 6 2018 fixqt4headers.pl
-rwxrwxr-x 1 adil adil 5055 Oct 18 19:32 freetype-config
-rwxrwxr-x 1 adil adil 250 Oct 18 19:32 freeze_graph
-rwxrwxr-x 1 adil adil 230 Oct 18 19:32 futurize
-rwxrwxr-x 1 adil adil 26312 Oct 18 19:32 gapplication
-rwxrwxr-x 1 adil adil 63840 Oct 18 19:32 gdbus
-rwxrwxr-x 1 adil adil 2054 Oct 18 19:32 gdbus-codegen
-rwxrwxr-x 1 adil adil 25936 Apr 27 2020 genbrk
-rwxrwxr-x 1 adil adil 21248 Apr 27 2020 gencfu
-rwxrwxr-x 1 adil adil 38936 Apr 27 2020 gencnval
-rwxrwxr-x 1 adil adil 41008 Apr 27 2020 gendict
-rwxrwxr-x 1 adil adil 148072 Apr 27 2020 genrb
-rwxrwxr-x 1 adil adil 157040 Nov 16 2017 gif2h5
-rwxrwxr-x 1 adil adil 104944 Oct 18 19:32 gio
-rwxrwxr-x 1 adil adil 19880 Nov 6 2019 gio-launch-desktop
-rwxrwxr-x 1 adil adil 25232 Oct 18 19:32 gio-querymodules
-rwxrwxr-x 1 adil adil 58752 Oct 18 19:32 glib-compile-resources
-rwxrwxr-x 1 adil adil 63880 Oct 18 19:32 glib-compile-schemas
-rwxrwxr-x 1 adil adil 40981 Nov 6 2019 glib-genmarshal
-rwxrwxr-x 1 adil adil 5422 Oct 18 19:32 glib-gettextize
-rwxrwxr-x 1 adil adil 29213 Nov 6 2019 glib-mkenums
-rwxrwxr-x 1 adil adil 20432 Oct 18 19:32 gobject-query
-rwxrwxr-x 1 adil adil 25480 Oct 18 19:32 gresource
-rwxrwxr-x 1 adil adil 36320 Oct 18 19:32 gsettings
-rwxr-xr-x 1 adil adil 1296 Oct 18 19:24 gsl-config
-rwxr-xr-x 1 adil adil 16024 Jun 11 2018 gsl-histogram
-rwxr-xr-x 1 adil adil 29800 Jun 11 2018 gsl-randist
-rwxrwxr-x 1 adil adil 57952 Apr 13 2018 gst-device-monitor-1.0
-rwxrwxr-x 1 adil adil 79248 Apr 13 2018 gst-discoverer-1.0
-rwxrwxr-x 1 adil adil 160016 Apr 13 2018 gst-inspect-1.0
-rwxrwxr-x 1 adil adil 100632 Apr 13 2018 gst-launch-1.0
-rwxrwxr-x 1 adil adil 146240 Apr 13 2018 gst-play-1.0
-rwxrwxr-x 1 adil adil 76744 Apr 13 2018 gst-stats-1.0
-rwxrwxr-x 1 adil adil 44096 Apr 13 2018 gst-typefind-1.0
-rwxrwxr-x 1 adil adil 36128 Oct 18 19:32 gtester
-rwxrwxr-x 1 adil adil 19094 Nov 6 2019 gtester-report
-rwxrwxr-x 1 adil adil 151688 Nov 16 2017 h52gif
-rwxrwxr-x 1 adil adil 13595 Oct 18 19:32 h5c++
-rwxrwxr-x 1 adil adil 13744 Oct 18 19:32 h5cc
-rwxrwxr-x 1 adil adil 151136 Nov 16 2017 h5copy
-rwxrwxr-x 1 adil adil 25352 Nov 16 2017 h5debug
-rwxrwxr-x 1 adil adil 247328 Nov 16 2017 h5diff
-rwxrwxr-x 1 adil adil 255176 Nov 16 2017 h5dump
-rwxrwxr-x 1 adil adil 13031 Oct 18 19:32 h5fc
-rwxrwxr-x 1 adil adil 197352 Nov 16 2017 h5import
-rwxrwxr-x 1 adil adil 151424 Nov 16 2017 h5jam
-rwxrwxr-x 1 adil adil 191440 Nov 16 2017 h5ls
-rwxrwxr-x 1 adil adil 146824 Nov 16 2017 h5mkgrp
-rwxrwxr-x 1 adil adil 188616 Nov 16 2017 h5perf_serial
-rwxrwxr-x 1 adil adil 6109 Nov 16 2017 h5redeploy
-rwxrwxr-x 1 adil adil 229400 Nov 16 2017 h5repack
-rwxrwxr-x 1 adil adil 20784 Nov 16 2017 h5repart
-rwxrwxr-x 1 adil adil 165264 Nov 16 2017 h5stat
-rwxrwxr-x 1 adil adil 151288 Nov 16 2017 h5unjam
-rwxrwxr-x 1 adil adil 39968 Oct 18 19:32 iconv
-rwxrwxr-x 1 adil adil 22482 Oct 18 19:32 icu-config
-rwxrwxr-x 1 adil adil 20872 Apr 27 2020 icuinfo
-rwxrwxr-x 1 adil adil 102 Oct 18 19:32 idle
drwxr-xr-x 3 adil adil 20480 Oct 27 10:49 info
-rwxr-xr-x 1 adil adil 63520 Nov 28 2018 infocmp
lrwxrwxrwx 1 adil adil 3 Nov 28 2018 infotocap -> tic
-rwxrwxr-x 1 adil adil 278 Oct 18 19:32 iptest
-rwxrwxr-x 1 adil adil 278 Oct 18 19:32 iptest2
-rwxrwxr-x 1 adil adil 239 Oct 18 19:32 ipython
-rwxrwxr-x 1 adil adil 239 Oct 18 19:32 ipython2
-rwxrwxr-x 1 adil adil 43120 Nov 8 2017 jpegtran
-rwxrwxr-x 1 adil adil 184496 Aug 24 2018 lconvert
-rwxrwxr-x 1 adil adil 2333 Oct 18 19:32 libpng16-config
lrwxrwxrwx 1 adil adil 15 Oct 18 19:32 libpng-config -> libpng16-config
-rwxrwxr-x 1 adil adil 1080616 Aug 24 2018 linguist
-rwxrwxr-x 1 adil adil 336968 Aug 24 2018 lrelease
-rwxrwxr-x 1 adil adil 632368 Aug 24 2018 lupdate
-rwxr-xr-x 1 adil adil 207184 Apr 24 2018 lz4
lrwxrwxrwx 1 adil adil 3 Apr 24 2018 lz4c -> lz4
lrwxrwxrwx 1 adil adil 3 Apr 24 2018 lz4cat -> lz4
lrwxrwxrwx 1 adil adil 2 May 16 2018 lzcat -> xz
lrwxrwxrwx 1 adil adil 6 May 16 2018 lzcmp -> xzdiff
lrwxrwxrwx 1 adil adil 6 May 16 2018 lzdiff -> xzdiff
lrwxrwxrwx 1 adil adil 6 May 16 2018 lzegrep -> xzgrep
lrwxrwxrwx 1 adil adil 6 May 16 2018 lzfgrep -> xzgrep
lrwxrwxrwx 1 adil adil 6 May 16 2018 lzgrep -> xzgrep
lrwxrwxrwx 1 adil adil 6 May 16 2018 lzless -> xzless
lrwxrwxrwx 1 adil adil 2 May 16 2018 lzma -> xz
-rwxr-xr-x 1 adil adil 20848 May 16 2018 lzmadec
-rwxr-xr-x 1 adil adil 16656 Oct 18 19:24 lzmainfo
lrwxrwxrwx 1 adil adil 6 May 16 2018 lzmore -> xzmore
-rwxrwxr-x 1 adil adil 75464 Apr 27 2020 makeconv
-rwxrwxr-x 1 adil adil 229 Oct 18 19:32 markdown_py
-rwxrwxr-x 1 adil adil 924832 Aug 24 2018 moc
lrwxrwxrwx 1 adil adil 12 Oct 18 19:32 mpic++ -> opal_wrapper
lrwxrwxrwx 1 adil adil 12 Oct 18 19:32 mpicc -> opal_wrapper
lrwxrwxrwx 1 adil adil 12 Oct 18 19:32 mpiCC -> opal_wrapper
lrwxrwxrwx 1 adil adil 12 Oct 18 19:32 mpicxx -> opal_wrapper
lrwxrwxrwx 1 adil adil 7 Oct 18 19:32 mpiexec -> orterun
lrwxrwxrwx 1 adil adil 12 Oct 18 19:32 mpif77 -> opal_wrapper
lrwxrwxrwx 1 adil adil 12 Oct 18 19:32 mpif90 -> opal_wrapper
lrwxrwxrwx 1 adil adil 12 Oct 18 19:32 mpifort -> opal_wrapper
lrwxrwxrwx 1 adil adil 7 Oct 18 19:32 mpirun -> orterun
-rwxr-xr-x 1 adil adil 6204 Oct 18 19:24 ncursesw6-config
-rwxrwxr-x 1 adil adil 226 Oct 18 19:32 nosetests
lrwxrwxrwx 1 adil adil 10 Oct 18 19:32 ompi-clean -> orte-clean
lrwxrwxrwx 1 adil adil 8 Oct 18 19:32 ompi-dvm -> orte-dvm
-rwxrwxr-x 1 adil adil 38000 Oct 18 19:32 ompi_info
lrwxrwxrwx 1 adil adil 7 Oct 18 19:32 ompi-ps -> orte-ps
lrwxrwxrwx 1 adil adil 11 Oct 18 19:32 ompi-server -> orte-server
lrwxrwxrwx 1 adil adil 11 Oct 18 19:32 ompi-submit -> orte-submit
lrwxrwxrwx 1 adil adil 8 Oct 18 19:32 ompi-top -> orte-top
-rwxrwxr-x 1 adil adil 34144 Jan 13 2020 opal_wrapper
-rwxrwxr-x 1 adil adil 667624 Dec 20 2019 openssl
lrwxrwxrwx 1 adil adil 12 Oct 18 19:32 ortecc -> opal_wrapper
-rwxrwxr-x 1 adil adil 25544 Jan 13 2020 orte-clean
-rwxrwxr-x 1 adil adil 19920 Jan 13 2020 orted
-rwxrwxr-x 1 adil adil 81504 Jan 13 2020 orte-dvm
-rwxrwxr-x 1 adil adil 45416 Oct 18 19:32 orte-info
-rwxrwxr-x 1 adil adil 30648 Jan 13 2020 orte-ps
-rwxrwxr-x 1 adil adil 202120 Jan 13 2020 orterun
-rwxrwxr-x 1 adil adil 26256 Jan 13 2020 orte-server
-rwxrwxr-x 1 adil adil 129384 Jan 13 2020 orte-submit
-rwxrwxr-x 1 adil adil 37112 Jan 13 2020 orte-top
lrwxrwxrwx 1 adil adil 12 Oct 18 19:32 oshcc -> opal_wrapper
lrwxrwxrwx 1 adil adil 12 Oct 18 19:32 oshfort -> opal_wrapper
-rwxrwxr-x 1 adil adil 38016 Oct 18 19:32 oshmem_info
lrwxrwxrwx 1 adil adil 7 Oct 18 19:32 oshrun -> orterun
-rwxrwxr-x 1 adil adil 25648 Aug 23 2018 pal2rgb
drwxr-xr-x 2 adil adil 4096 Oct 27 10:28 particles
-rwxrwxr-x 1 adil adil 232 Oct 18 19:32 pasteurize
-rwxr-xr-x 1 adil adil 130888 Oct 18 19:24 patchelf
-rwxrwxr-x 1 adil adil 2369 Oct 18 19:32 pcre-config
-rwxrwxr-x 1 adil adil 60216 Jun 24 20:37 pcregrep
-rwxrwxr-x 1 adil adil 86280 Jun 24 20:37 pcretest
-rwxr-xr-x 1 adil adil 227 Oct 18 19:24 pip
-rwxrwxr-x 1 adil adil 52968 Aug 24 2018 pixeltool
-rwxrwxr-x 1 adil adil 58304 Apr 27 2020 pkgdata
-rwxr-xr-x 1 adil adil 233 Oct 18 19:24 pkginfo
-rwxrwxr-x 1 adil adil 56008 Jan 23 2018 pngfix
-rwxrwxr-x 1 adil adil 15464 Jan 23 2018 png-fix-itxt
-rwxrwxr-x 1 adil adil 25512 Aug 23 2018 ppm2tiff
-rwxrwxr-x 1 adil adil 30536 Dec 16 2019 protoc
-rwxrwxr-x 1 adil adil 87 Oct 18 19:32 pydoc
-rwxr-xr-x 1 adil adil 232 Oct 18 19:32 pygmentize
-rwxrwxr-x 1 adil adil 77 Oct 18 19:32 pylupdate5
-rwxr-xr-x 1 adil adil 295 Apr 13 2016 .pyopengl-post-link.sh
-rwxrwxr-x 1 adil adil 73 Oct 18 19:32 pyrcc5
lrwxrwxrwx 1 adil adil 9 Oct 18 19:32 python -> python2.7
lrwxrwxrwx 1 adil adil 9 Oct 18 19:32 python2 -> python2.7
-rwxrwxr-x 1 adil adil 11096 Mar 27 2018 python2.7
-rwxrwxr-x 1 adil adil 1690 Oct 18 19:32 python2.7-config
lrwxrwxrwx 1 adil adil 16 Oct 18 19:32 python2-config -> python2.7-config
lrwxrwxrwx 1 adil adil 16 Oct 18 19:32 python-config -> python2.7-config
-rwxrwxr-x 1 adil adil 72 Oct 18 19:32 pyuic5
-rwxrwxr-x 1 adil adil 56736 Aug 24 2018 qcollectiongenerator
-rwxrwxr-x 1 adil adil 48504 Aug 24 2018 qdbus
-rwxrwxr-x 1 adil adil 192104 Aug 24 2018 qdbuscpp2xml
-rwxrwxr-x 1 adil adil 110968 Aug 24 2018 qdbusviewer
-rwxrwxr-x 1 adil adil 60512 Aug 24 2018 qdbusxml2cpp
-rwxrwxr-x 1 adil adil 1052208 Aug 24 2018 qdoc
-rwxrwxr-x 1 adil adil 5494856 Aug 24 2018 qgltf
-rwxrwxr-x 1 adil adil 151760 Aug 24 2018 qhelpconverter
-rwxrwxr-x 1 adil adil 23216 Aug 24 2018 qhelpgenerator
-rwxrwxr-x 1 adil adil 88880 Aug 24 2018 qlalr
-rwxrwxr-x 1 adil adil 23194992 Oct 18 19:32 qmake
-rwxrwxr-x 1 adil adil 56688 Aug 24 2018 qml
-rwxrwxr-x 1 adil adil 745440 Aug 24 2018 qmlcachegen
-rwxrwxr-x 1 adil adil 89968 Aug 24 2018 qmleasing
-rwxrwxr-x 1 adil adil 208592 Aug 24 2018 qmlimportscanner
-rwxrwxr-x 1 adil adil 170976 Aug 24 2018 qmllint
-rwxrwxr-x 1 adil adil 72608 Aug 24 2018 qmlmin
-rwxrwxr-x 1 adil adil 102640 Aug 24 2018 qmlplugindump
-rwxrwxr-x 1 adil adil 127000 Aug 24 2018 qmlprofiler
-rwxrwxr-x 1 adil adil 48656 Aug 24 2018 qmlscene
-rwxrwxr-x 1 adil adil 6312 Aug 24 2018 qmltestrunner
-rwxrwxr-x 1 adil adil 245648 Aug 24 2018 qscxmlc
-rwxrwxr-x 1 adil adil 44152 Aug 24 2018 qtattributionsscanner
-rw-rw-r-- 1 adil adil 137 Oct 18 19:32 qt.conf
-rwxrwxr-x 1 adil adil 57120 Aug 24 2018 qtdiag
-rwxrwxr-x 1 adil adil 23112 Aug 24 2018 qtpaths
-rwxrwxr-x 1 adil adil 23216 Aug 24 2018 qtplugininfo
-rwxrwxr-x 1 adil adil 1698424 Aug 24 2018 qwebengine_convert_dict
drwxr-xr-x 2 adil adil 4096 Oct 20 12:39 r2d_03
drwxr-xr-x 2 adil adil 4096 Oct 22 11:02 r2d_04
drwxr-xr-x 2 adil adil 4096 Oct 26 11:39 r2d_05
-rwxrwxr-x 1 adil adil 33704 Aug 23 2018 raw2tiff
-rwxrwxr-x 1 adil adil 846928 Aug 24 2018 rcc
-rwxrwxr-x 1 adil adil 16264 Nov 8 2017 rdjpgcom
drwxr-xr-x 2 adil adil 4096 Oct 27 10:07 relion2d_01
drwxr-xr-x 2 adil adil 4096 Oct 27 10:08 relion2d_02
drwxr-xr-x 2 adil adil 4096 Oct 27 10:08 relion2d_03
drwxr-xr-x 2 adil adil 4096 Oct 27 10:10 relion2d_04
drwxr-xr-x 2 adil adil 4096 Oct 27 10:10 relion2d_05
drwxr-xr-x 2 adil adil 4096 Oct 27 10:11 relion2d_06
drwxr-xr-x 2 adil adil 4096 Oct 27 10:12 relion2d_07
drwxr-xr-x 2 adil adil 4096 Oct 27 10:21 relion2d_08
drwxr-xr-x 2 adil adil 4096 Oct 27 10:25 relion2d_09
drwxr-xr-x 2 adil adil 4096 Oct 27 10:30 relion2d_10
drwxr-xr-x 2 adil adil 4096 Oct 27 10:31 relion2d_11
drwxr-xr-x 2 adil adil 4096 Oct 27 10:33 relion2d_12
drwxr-xr-x 2 adil adil 4096 Oct 27 10:42 relion2d_13
drwxr-xr-x 2 adil adil 4096 Oct 27 11:02 relion2d_14
-rwxrwxr-x 1 adil adil 332168 Oct 18 19:32 repc
lrwxrwxrwx 1 adil adil 4 Nov 28 2018 reset -> tset
-rwxrwxr-x 1 adil adil 253 Oct 18 19:32 saved_model_cli
drwxr-xr-x 2 adil adil 4096 Oct 27 10:32 sets
lrwxrwxrwx 1 adil adil 12 Oct 18 19:32 shmemcc -> opal_wrapper
lrwxrwxrwx 1 adil adil 12 Oct 18 19:32 shmemfort -> opal_wrapper
lrwxrwxrwx 1 adil adil 7 Oct 18 19:32 shmemrun -> orterun
-rwxrwxr-x 1 adil adil 427032 Mar 23 2018 sip
-rwxrwxr-x 1 adil adil 18550 Oct 18 19:32 smtpd.py
-rwxr-xr-x 1 adil adil 38332 Sep 21 2019 sp_3dvariability.py
-rwxr-xr-x 1 adil adil 3018 Sep 21 2019 sp_ali2d_mref.py
-rwxr-xr-x 1 adil adil 8929 Sep 21 2019 sp_ali2d.py
-rwxr-xr-x 1 adil adil 12233 Sep 21 2019 sp_ali3d.py
-rwxr-xr-x 1 adil adil 5146 Sep 21 2019 sp_ali_vol.py
lrwxrwxrwx 1 adil adil 5 Sep 30 2019 sparx -> sx.py
-rwxr-xr-x 1 adil adil 43266 Sep 21 2019 sp_auto.py
-rwxr-xr-x 1 adil adil 4541 Sep 21 2019 sp_ave_ali.py
-rwxr-xr-x 1 adil adil 3677 Sep 21 2019 sp_batch.py
-rwxr-xr-x 1 adil adil 17742 Sep 21 2019 sp_center_projections.py
-rwxr-xr-x 1 adil adil 23364 Sep 21 2019 sp_chains.py
-rwxr-xr-x 1 adil adil 3673 Sep 21 2019 sp_cinderella_pred.py
-rwxr-xr-x 1 adil adil 27066 Sep 21 2019 sp_compute_isac_avg.py
-rwxr-xr-x 1 adil adil 31246 Sep 21 2019 sp_consistency.py
-rwxr-xr-x 1 adil adil 4656 Sep 21 2019 sp_copyfromtif.py
-rwxr-xr-x 1 adil adil 3584 Sep 21 2019 sp_cpy.py
-rwxr-xr-x 1 adil adil 2679 Sep 21 2019 sp_cryolo_boxmanager.py
-rwxr-xr-x 1 adil adil 6321 Sep 21 2019 sp_cryolo_predict.py
-rwxr-xr-x 1 adil adil 9642 Sep 21 2019 sp_cryolo_train.py
-rwxr-xr-x 1 adil adil 17204 Sep 21 2019 sp_cter.py
-rwxr-xr-x 1 adil adil 40747 Sep 21 2019 sp_ctf.py
-rwxr-xr-x 1 adil adil 29124 Sep 21 2019 sp_ctf_refine.py
-rwxr-xr-x 1 adil adil 4745 Sep 21 2019 sp_ctf_refine_selection.py
-rwxr-xr-x 1 adil adil 4299 Sep 21 2019 sp_factcoords.py
-rwxr-xr-x 1 adil adil 5122 Sep 21 2019 sp_filrecons3d.py
-rwxr-xr-x 1 adil adil 5997 Sep 21 2019 sp_filterlocal.py
-rwxr-xr-x 1 adil adil 6480 Sep 21 2019 sp_find_struct.py
-rwxr-xr-x 1 adil adil 39358 Sep 21 2019 sp_fit_error.py
-rwxr-xr-x 1 adil adil 3984 Sep 21 2019 sp_genbuf.py
-rwxr-xr-x 1 adil adil 126307 Sep 21 2019 sp_gui_cter.py
-rwxr-xr-x 1 adil adil 20544 Sep 21 2019 sp_gui_meridien.py
-rwxr-xr-x 1 adil adil 1254019 Sep 21 2019 sp_gui.py
-rwxr-xr-x 1 adil adil 181759 Sep 21 2019 sp_gui_unblur.py
-rwxr-xr-x 1 adil adil 3108 Sep 21 2019 sp_hac_averages.py
-rwxr-xr-x 1 adil adil 3832 Sep 21 2019 sp_hac_clustering.py
-rwxr-xr-x 1 adil adil 5137 Sep 21 2019 sp_header.py
-rwxr-xr-x 1 adil adil 18864 Sep 21 2019 sp_helical_demo.py
-rwxr-xr-x 1 adil adil 105204 Sep 21 2019 sp_helixboxer.py
lrwxrwxrwx 1 adil adil 9 Sep 30 2019 sphire -> sp_gui.py
-rwxr-xr-x 1 adil adil 10535 Sep 21 2019 sp_ihrsr.py
-rwxr-xr-x 1 adil adil 3477 Sep 21 2019 sp_imgstat.py
-rwxr-xr-x 1 adil adil 82384 Sep 21 2019 sp_isac2.py
-rwxr-xr-x 1 adil adil 4891 Sep 21 2019 sp_k_means_groups.py
-rwxr-xr-x 1 adil adil 5302 Sep 21 2019 sp_k_means.py
-rwxr-xr-x 1 adil adil 5439 Sep 21 2019 sp_k_means_stable.py
-rwxr-xr-x 1 adil adil 4370 Sep 21 2019 sp_local_ali2d.py
-rwxr-xr-x 1 adil adil 5403 Sep 21 2019 sp_local_ali3dm.py
-rwxr-xr-x 1 adil adil 6123 Sep 21 2019 sp_local_ali3d.py
-rwxr-xr-x 1 adil adil 10848 Sep 21 2019 sp_locres.py
-rwxr-xr-x 1 adil adil 16018 Sep 21 2019 sp_mask.py
-rwxr-xr-x 1 adil adil 494937 Sep 21 2019 sp_meridien_alpha2.py
-rwxr-xr-x 1 adil adil 494346 Sep 24 2019 sp_meridien_alpha.py
-rwxr-xr-x 1 adil adil 478702 Sep 21 2019 sp_meridien_beta.py
-rwxr-xr-x 1 adil adil 346967 Sep 21 2019 sp_meridien_pre_things.py
-rwxr-xr-x 1 adil adil 478707 Sep 27 2019 sp_meridien.py
-rwxr-xr-x 1 adil adil 472626 Sep 21 2019 sp_meridien_sort.py
-rwxr-xr-x 1 adil adil 25053 Sep 21 2019 sp_micrograh_selection.py
-rwxr-xr-x 1 adil adil 6063 Sep 21 2019 sp_montage.py
-rwxr-xr-x 1 adil adil 5671 Sep 21 2019 sp_mref_ali2d.py
-rwxr-xr-x 1 adil adil 9147 Sep 21 2019 sp_mref_ali3d.py
-rwxr-xr-x 1 adil adil 5399 Sep 21 2019 sp_mref_alignment.py
-rwxr-xr-x 1 adil adil 6167 Sep 21 2019 sp_multi_ali2d.py
-rwxr-xr-x 1 adil adil 4931 Sep 21 2019 sp_multi_assign.py
-rwxr-xr-x 1 adil adil 2942 Sep 21 2019 sp_params_2D_to_3D.py
-rwxr-xr-x 1 adil adil 2946 Sep 21 2019 sp_params_3D_to_2D.py
-rwxr-xr-x 1 adil adil 4152 Sep 21 2019 sp_pca.py
-rwxr-xr-x 1 adil adil 12030 Sep 21 2019 sp_pdb2em.py
-rwxr-xr-x 1 adil adil 191670 Sep 21 2019 sp_pipe.py
-rwxr-xr-x 1 adil adil 3233 Sep 21 2019 sp_plot_projs_distrib.py
-rwxr-xr-x 1 adil adil 3318 Sep 21 2019 sp_prepare_2d_forPCA.py
-rwxr-xr-x 1 adil adil 84357 Sep 21 2019 sp_process.py
-rwxr-xr-x 1 adil adil 41622 Sep 21 2019 sp_proj_compare.py
-rwxr-xr-x 1 adil adil 4390 Sep 21 2019 sp_project3d.py
-rwxr-xr-x 1 adil adil 19257 Sep 21 2019 sp_proj_stability.py
-rwxr-xr-x 1 adil adil 6250 Sep 21 2019 sp_realignment.py
-rwxr-xr-x 1 adil adil 2909 Sep 21 2019 sp_real.py
-rwxr-xr-x 1 adil adil 4453 Sep 21 2019 sp_recons3d_f.py
-rwxr-xr-x 1 adil adil 6853 Sep 21 2019 sp_recons3d_n.py
-rwxr-xr-x 1 adil adil 75707 Sep 21 2019 sp_relion2sphire.py
-rwxr-xr-x 1 adil adil 4779 Sep 21 2019 sp_reproducibility.py
-rwxr-xr-x 1 adil adil 11449 Sep 21 2019 sp_resample.py
-rwxr-xr-x 1 adil adil 78401 Sep 21 2019 sp_rewindow.py
-rwxr-xr-x 1 adil adil 4463 Sep 21 2019 sp_rot_sym.py
-rwxr-xr-x 1 adil adil 48498 Sep 21 2019 sp_rsort3d.py
-rwxr-xr-x 1 adil adil 56593 Sep 21 2019 sp_rviper.py
-rwxr-xr-x 1 adil adil 10287 Sep 21 2019 sp_separate_class.py
-rwxr-xr-x 1 adil adil 23883 Sep 21 2019 sp_shiftali.py
-rwxr-xr-x 1 adil adil 388549 Sep 21 2019 sp_sort3d_depth.py
-rwxr-xr-x 1 adil adil 39010 Sep 21 2019 sp_sort3d.py
lrwxrwxrwx 1 adil adil 8 Sep 30 2019 sp_sparx -> sp_sx.py
-rwxr-xr-x 1 adil adil 23649 Sep 21 2019 sp_sphire2relion.py
-rwxr-xr-x 1 adil adil 3227 Sep 21 2019 sp_spliteigen.py
-rwxr-xr-x 1 adil adil 5002 Sep 21 2019 sp_ssnr3d.py
-rwxr-xr-x 1 adil adil 9054 Sep 21 2019 sp_stability.py
-rwxr-xr-x 1 adil adil 18102 Sep 21 2019 sp_summovie.py
-rwxr-xr-x 1 adil adil 2299 Sep 21 2019 sp_sx.py
-rwxr-xr-x 1 adil adil 3474 Sep 21 2019 sp_transform2d.py
-rwxr-xr-x 1 adil adil 27833 Sep 21 2019 sp_unblur_old.py
-rwxr-xr-x 1 adil adil 14762 Sep 21 2019 sp_unblur.py
-rwxr-xr-x 1 adil adil 3590 Sep 21 2019 sp_varimax.py
-rwxr-xr-x 1 adil adil 5054 Sep 21 2019 sp_var.py
-rwxr-xr-x 1 adil adil 11596 Sep 21 2019 sp_viper.py
-rwxr-xr-x 1 adil adil 81001 Sep 21 2019 sp_window.py
-rwxr-xr-x 1 adil adil 1424176 Jul 16 2019 sqlite3
-rwxr-xr-x 1 adil adil 29841 Aug 28 2018 sqlite3_analyzer
-rwxr-xr-x 1 adil adil 38029 Sep 21 2019 sx3dvariability.py
-rwxr-xr-x 1 adil adil 2317 Sep 21 2019 sxali2d_mref.py
-rwxr-xr-x 1 adil adil 8245 Sep 21 2019 sxali2d.py
-rwxr-xr-x 1 adil adil 11530 Sep 21 2019 sxali3d.py
-rwxr-xr-x 1 adil adil 4400 Sep 21 2019 sxali_vol.py
-rwxr-xr-x 1 adil adil 3812 Sep 21 2019 sxave_ali.py
-rwxr-xr-x 1 adil adil 3271 Sep 21 2019 sxbatch.py
-rwxr-xr-x 1 adil adil 16964 Sep 21 2019 sxcenter_projections.py
-rwxr-xr-x 1 adil adil 22762 Sep 21 2019 sxchains.py
-rwxr-xr-x 1 adil adil 26445 Sep 21 2019 sxcompute_isac_avg.py
-rwxr-xr-x 1 adil adil 30569 Sep 21 2019 sxconsistency.py
-rwxr-xr-x 1 adil adil 3890 Sep 21 2019 sxcopyfromtif.py
-rwxr-xr-x 1 adil adil 2984 Sep 21 2019 sxcpy.py
-rwxr-xr-x 1 adil adil 16577 Sep 21 2019 sxcter.py
-rwxr-xr-x 1 adil adil 40056 Sep 21 2019 sxctf.py
-rwxr-xr-x 1 adil adil 3624 Sep 21 2019 sxfactcoords.py
-rwxr-xr-x 1 adil adil 4479 Sep 21 2019 sxfilrecons3d.py
-rwxr-xr-x 1 adil adil 5528 Sep 21 2019 sxfilterlocal.py
-rwxr-xr-x 1 adil adil 5845 Sep 21 2019 sxfind_struct.py
-rwxr-xr-x 1 adil adil 38893 Sep 21 2019 sxfit_error.py
-rwxr-xr-x 1 adil adil 3249 Sep 21 2019 sxgenbuf.py
-rwxr-xr-x 1 adil adil 1500 Sep 21 2019 sxgui_cter.py
-rwxr-xr-x 1 adil adil 974 Sep 21 2019 sxgui_meridien.py
-rwxr-xr-x 1 adil adil 1563 Sep 21 2019 sxgui.py
-rwxr-xr-x 1 adil adil 1001 Sep 21 2019 sxgui_unblur.py
-rwxr-xr-x 1 adil adil 2401 Sep 21 2019 sxhac_averages.py
-rwxr-xr-x 1 adil adil 3186 Sep 21 2019 sxhac_clustering.py
-rwxr-xr-x 1 adil adil 4202 Sep 21 2019 sxheader.py
-rwxr-xr-x 1 adil adil 18131 Sep 21 2019 sxhelical_demo.py
-rwxr-xr-x 1 adil adil 1612 Sep 21 2019 sxheliconlocal.py
-rwxr-xr-x 1 adil adil 1613 Sep 21 2019 sxhelicon.py
-rwxr-xr-x 1 adil adil 20990 Sep 21 2019 sxhelicon_utils.py
-rwxr-xr-x 1 adil adil 104479 Sep 21 2019 sxhelixboxer.py
-rwxr-xr-x 1 adil adil 9956 Sep 21 2019 sxihrsr.py
-rwxr-xr-x 1 adil adil 2820 Sep 21 2019 sximgstat.py
-rwxr-xr-x 1 adil adil 77641 Sep 21 2019 sxisac2.py
-rwxr-xr-x 1 adil adil 4238 Sep 21 2019 sxk_means_groups.py
-rwxr-xr-x 1 adil adil 4566 Sep 21 2019 sxk_means.py
-rwxr-xr-x 1 adil adil 5391 Sep 21 2019 sxk_means_stable.py
-rwxr-xr-x 1 adil adil 3665 Sep 21 2019 sxlocal_ali2d.py
-rwxr-xr-x 1 adil adil 4745 Sep 21 2019 sxlocal_ali3dm.py
-rwxr-xr-x 1 adil adil 5522 Sep 21 2019 sxlocal_ali3d.py
-rwxr-xr-x 1 adil adil 9650 Sep 21 2019 sxlocres.py
-rwxr-xr-x 1 adil adil 13930 Sep 21 2019 sxmask.py
-rwxr-xr-x 1 adil adil 476720 Sep 21 2019 sxmeridien.py
-rwxr-xr-x 1 adil adil 5350 Sep 21 2019 sxmontage.py
-rwxr-xr-x 1 adil adil 5055 Sep 21 2019 sxmref_ali2d.py
-rwxr-xr-x 1 adil adil 8507 Sep 21 2019 sxmref_ali3d.py
-rwxr-xr-x 1 adil adil 4801 Sep 21 2019 sxmref_alignment.py
-rwxr-xr-x 1 adil adil 5559 Sep 21 2019 sxmulti_ali2d.py
-rwxr-xr-x 1 adil adil 4339 Sep 21 2019 sxmulti_assign.py
-rwxr-xr-x 1 adil adil 2160 Sep 21 2019 sxparams_2D_to_3D.py
-rwxr-xr-x 1 adil adil 2252 Sep 21 2019 sxparams_3D_to_2D.py
-rwxr-xr-x 1 adil adil 3654 Sep 21 2019 sxpca.py
-rwxr-xr-x 1 adil adil 11415 Sep 21 2019 sxpdb2em.py
-rwxr-xr-x 1 adil adil 199306 Sep 21 2019 sxpipe.py
-rwxr-xr-x 1 adil adil 2546 Sep 21 2019 sxplot_projs_distrib.py
-rwxr-xr-x 1 adil adil 2613 Sep 21 2019 sxprepare_2d_forPCA.py
-rwxr-xr-x 1 adil adil 81640 Sep 21 2019 sxprocess.py
-rwxr-xr-x 1 adil adil 7929 Sep 21 2019 sxproj_compare.py
-rwxr-xr-x 1 adil adil 3689 Sep 21 2019 sxproject3d.py
-rwxr-xr-x 1 adil adil 19031 Sep 21 2019 sxproj_stability.py
-rwxr-xr-x 1 adil adil 458 Sep 21 2019 sx.py
-rwxr-xr-x 1 adil adil 5636 Sep 21 2019 sxrealignment.py
-rwxr-xr-x 1 adil adil 2420 Sep 21 2019 sx_real.py
-rwxr-xr-x 1 adil adil 3881 Sep 21 2019 sxrecons3d_f.py
-rwxr-xr-x 1 adil adil 6108 Sep 21 2019 sxrecons3d_n.py
-rwxr-xr-x 1 adil adil 72199 Sep 21 2019 sxrelion2sphire.py
-rwxr-xr-x 1 adil adil 4150 Sep 21 2019 sxreproducibility.py
-rwxr-xr-x 1 adil adil 10921 Sep 21 2019 sxresample.py
-rwxr-xr-x 1 adil adil 77768 Sep 21 2019 sxrewindow.py
-rwxr-xr-x 1 adil adil 3770 Sep 21 2019 sxrot_sym.py
-rwxr-xr-x 1 adil adil 47775 Sep 21 2019 sxrsort3d.py
-rwxr-xr-x 1 adil adil 49540 Sep 21 2019 sxrviper.py
-rwxr-xr-x 1 adil adil 24079 Sep 21 2019 sxshiftali.py
-rwxr-xr-x 1 adil adil 1624 Sep 21 2019 sxsort3d_depth.py
-rwxr-xr-x 1 adil adil 21569 Sep 21 2019 sxsphire2relion.py
-rwxr-xr-x 1 adil adil 2609 Sep 21 2019 sxspliteigen.py
-rwxr-xr-x 1 adil adil 4404 Sep 21 2019 sxssnr3d.py
-rwxr-xr-x 1 adil adil 8322 Sep 21 2019 sxstability.py
-rwxr-xr-x 1 adil adil 17753 Sep 21 2019 sxsummovie.py
-rwxr-xr-x 1 adil adil 2774 Sep 21 2019 sxtransform2d.py
-rwxr-xr-x 1 adil adil 27563 Sep 21 2019 sxunblur.py
-rwxr-xr-x 1 adil adil 2862 Sep 21 2019 sxvarimax.py
-rwxr-xr-x 1 adil adil 4414 Sep 21 2019 sxvar.py
-rwxr-xr-x 1 adil adil 11032 Sep 21 2019 sxviper.py
-rwxr-xr-x 1 adil adil 76303 Sep 21 2019 sxwindow.py
-rwxrwxr-x 1 adil adil 49240 Jun 6 2018 syncqt.pl
-rwxr-xr-x 1 adil adil 14288 Nov 28 2018 tabs
lrwxrwxrwx 1 adil adil 8 Aug 28 2018 tclsh -> tclsh8.6
-rwxr-xr-x 1 adil adil 20616 Aug 28 2018 tclsh8.6
-rwxrwxr-x 1 adil adil 238 Oct 18 19:32 tensorboard
-rwxr-xr-x 1 adil adil 88136 Nov 28 2018 tic
-rwxrwxr-x 1 adil adil 29832 Aug 23 2018 tiff2bw
-rwxrwxr-x 1 adil adil 88040 Aug 23 2018 tiff2pdf
-rwxrwxr-x 1 adil adil 70976 Aug 23 2018 tiff2ps
-rwxrwxr-x 1 adil adil 29568 Aug 23 2018 tiff2rgba
-rwxrwxr-x 1 adil adil 25592 Aug 23 2018 tiffcmp
-rwxrwxr-x 1 adil adil 53656 Aug 23 2018 tiffcp
-rwxrwxr-x 1 adil adil 125736 Aug 23 2018 tiffcrop
-rwxrwxr-x 1 adil adil 25360 Aug 23 2018 tiffdither
-rwxrwxr-x 1 adil adil 34472 Aug 23 2018 tiffdump
-rwxrwxr-x 1 adil adil 30496 Aug 23 2018 tiffinfo
-rwxrwxr-x 1 adil adil 29704 Aug 23 2018 tiffmedian
-rwxrwxr-x 1 adil adil 21000 Aug 23 2018 tiffset
-rwxrwxr-x 1 adil adil 25168 Aug 23 2018 tiffsplit
-rwxrwxr-x 1 adil adil 262 Oct 18 19:32 toco
-rwxrwxr-x 1 adil adil 266 Oct 18 19:32 toco_from_protos
-rwxr-xr-x 1 adil adil 22480 Nov 28 2018 toe
-rwxr-xr-x 1 adil adil 22512 Nov 28 2018 tput
-rwxr-xr-x 1 adil adil 30680 Nov 28 2018 tset
-rwxrwxr-x 1 adil adil 487240 Aug 24 2018 uic
lrwxrwxrwx 1 adil adil 3 Apr 24 2018 unlz4 -> lz4
lrwxrwxrwx 1 adil adil 2 May 16 2018 unlzma -> xz
lrwxrwxrwx 1 adil adil 2 May 16 2018 unxz -> xz
lrwxrwxrwx 1 adil adil 4 Nov 5 2018 unzstd -> zstd
-rwxr-xr-x 1 adil adil 223 Oct 18 19:24 wheel
lrwxrwxrwx 1 adil adil 7 Aug 28 2018 wish -> wish8.6
-rwxr-xr-x 1 adil adil 20768 Aug 28 2018 wish8.6
-rwxrwxr-x 1 adil adil 16368 Nov 8 2017 wrjpgcom
-rwxr-xr-x 1 adil adil 1930 Oct 18 19:24 xml2-config
-rwxr-xr-x 1 adil adil 30272 Jun 24 2019 xmlcatalog
-rwxr-xr-x 1 adil adil 93152 Jun 24 2019 xmllint
-rwxrwxr-x 1 adil adil 52392 Aug 24 2018 xmlpatterns
-rwxrwxr-x 1 adil adil 10608 Aug 24 2018 xmlpatternsvalidator
-rwxrwxr-x 1 adil adil 41272 Oct 9 16:34 xmlwf
-rwxr-xr-x 1 adil adil 99208 Oct 18 19:24 xz
lrwxrwxrwx 1 adil adil 2 May 16 2018 xzcat -> xz
lrwxrwxrwx 1 adil adil 6 May 16 2018 xzcmp -> xzdiff
-rwxr-xr-x 1 adil adil 20848 May 16 2018 xzdec
-rwxr-xr-x 1 adil adil 6632 May 16 2018 xzdiff
lrwxrwxrwx 1 adil adil 6 May 16 2018 xzegrep -> xzgrep
lrwxrwxrwx 1 adil adil 6 May 16 2018 xzfgrep -> xzgrep
-rwxr-xr-x 1 adil adil 5628 May 16 2018 xzgrep
-rwxr-xr-x 1 adil adil 1802 May 16 2018 xzless
-rwxr-xr-x 1 adil adil 2161 May 16 2018 xzmore
-rwxr-xr-x 1 adil adil 791928 Nov 5 2018 zstd
lrwxrwxrwx 1 adil adil 4 Nov 5 2018 zstdcat -> zstd
lrwxrwxrwx 1 adil adil 4 Nov 5 2018 zstdmt -> zstd
ls -al sets output is:
total 648
drwxr-xr-x 2 adil adil 4096 Oct 27 10:32 .
drwxr-xr-x 22 adil adil 20480 Oct 27 11:03 ..
-rw-r--r-- 1 adil adil 633259 Oct 27 10:32 all.lst
-rw-r--r-- 1 adil adil 156 Oct 27 10:32 .browsercache.json
ls -al particles output is:
total 5149284
drwxr-xr-x 2 adil adil 4096 Oct 27 10:28 .
drwxr-xr-x 22 adil adil 20480 Oct 27 11:03 ..
-rw-r--r-- 1 adil adil 974 Oct 27 10:28 .browsercache.json
-rw-r--r-- 1 adil adil 5272832104 Oct 27 10:28 particles_datasets-MRC_10049_Paerticle_Set.hdf
Thanks....
from eman2.
Related Issues (20)
- lacks a type converter from python utf string or bytes to std::string
- GPU too old HOT 4
- Questionable detection of 8-bit-packed mode from MRC headers HOT 4
- Useless code in libEM/emdata_transform.cpp
- Incorrect convolution processing under some circumstances HOT 1
- Bogus method wrappers HOT 5
- No rule to make target `/usr/lib64/libGLX.so' HOT 11
- New release supporting recent boost.python HOT 1
- Status of tomo in devel? HOT 4
- How to determine pixel width (Angstrom) when calculating FSC using e2proc3d? HOT 2
- corner cases of Transform class HOT 7
- Not defined variable in e2spt_tempmatch.py HOT 4
- e2ctf_auto in lores mode does not produce particle sets
- RuntimeError: std::exception caused by xform_align_nbest HOT 1
- libboost_python37.so.1.76.0: cannot open shared when test e2speedtest.py HOT 1
- cannot find fftw3d and fftw3f header files. HOT 13
- Dependency installation issue HOT 1
- substitution for runpar in eman2 HOT 3
- instructions to install to existing anaconda HOT 5
- Installation through conda HOT 1
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from eman2.