crowmane420 Goto Github PK

bacterial-genomics-tutorial

bioinformatics-workbook

Bioinformatics Workbook repository

bioinftraining

Repository for bioinformatics training at the Norwegian Veterinary Institute

blobtoolkit

Interactive quality assessment of genome assemblies

ccs

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

checkm

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

common_analyses

Repository of common bioinformatics scripts

common_scripts

my bin directory

crowmane420

Config files for my GitHub profile.

data_graphing

ready-made python-Plotly applications for data visualization

datascience-workbook

Tutorials and introduction to linux and high performance computing

demo-repo

demo

dipasm

e-mtab-6141

Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.

falcon

FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

flexidot

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

funannotate

Eukaryotic Genome Annotation Pipeline

fungalassemblerpipeline

A pipeline dedicated to the assembly of fungal genomes with ONT reads

gengraph

A repository for the GenGraph toolkit for the creation and manipulation of graph genomes

genome_fasta_modifiers

genometools

GenomeTools genome analysis system.

glimmav2

interactive plots for differential expression analysis

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

intervene

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

introtor-1

karyoploter

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

longqc

LongQC is a tool for the data quality control of the PacBio and ONT long reads.

maker-docker

Docker image as base for building full MAKER image

melbioinf_docs

Melbourne Bioinformatics documentation in markdown format

mitohifi

Find, circularise and annotate mitogenome from PacBio assemblies