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Comments (4)

awvwgk avatar awvwgk commented on June 11, 2024 2

I have to admit, that I also liked this particular printout in the standard output, made it easy to quickly get a rough idea of the ensemble.

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fabothch avatar fabothch commented on June 11, 2024 1

To answer the second part: the -cbonds option allows the user to constrain all bond lengths automatically by providing a force constant. This option has been implemented for being used together with the GFN-FF force field e.g. for metal organic complexes. This is used to avoid dissociation if the forces in the metadynamics simulation are very strong. This option is just for convenience, the user can supply any constraint manually if desired.

The first part has to be answered by @pprcht .

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pprcht avatar pprcht commented on June 11, 2024

I surely can add some kind of verbose flag for that, but since this printout is (was) right at the end of the program anyways, it would probably be simpler to use cat crest.energies in the command line, just after execution of the program.

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lizhiq16 avatar lizhiq16 commented on June 11, 2024

I often calculate a batch of molecules. Generally, I directly save the screen output separately as a file for further check, so I don’t want to save another more file (because there will be too many files). It's OK to keep current output, and frankly speaking, I prefer the current form output when dealing with a single task. I will add "crest.energies" to the end of the file I saved.
Thank you very much for your kindly reply.

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