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avanetten avatar avanetten commented on July 18, 2024

I am guessing that you are using python 3. We built APLS with python 2, and haven't yet ported it to python 3. The python 3 version should be coming soon.

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antran89 avatar antran89 commented on July 18, 2024

Hi @avanetten,
I am using python2

MAC:~ an.tran$ python
Python 2.7.15 (default, Sep 18 2018, 20:16:18)
[GCC 4.2.1 Compatible Apple LLVM 9.1.0 (clang-902.0.39.2)] on darwin
Type "help", "copyright", "credits" or "license" for more information.

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avanetten avatar avanetten commented on July 18, 2024

The issue is networkx 2.2. The apls_environment.yml file uses networkx 1.11, which treats iterators differently than networkx 2.2. Once we update the code to python 3, we will also use the most recent version of networkx, but for now I recommend just invoking the included environment with:
conda env create -f apls_environment.yml
source activate apls_environment

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antran89 avatar antran89 commented on July 18, 2024

Any updates on this thread. Thanks.

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