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Xiangzhen Kong's Projects

alleninf icon alleninf

Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.

bids-examples icon bids-examples

A set of BIDS compatible datasets with empty nifti files that can be used for testing software.

bit icon bit

Brain Imaging Toolkit (BIT)

calcfd icon calcfd

Calculate the fractal dimensionality of a 3D structure

cmtool icon cmtool

Command line tool to query the Brain Coactivation Map data

congrads icon congrads

Congrads is a data-driven method for mapping the spatial organisation of connectivity within a pre-defined region-of-interest (i.e. connectopic mapping) and fitting the results with a spatial statisical model that summarises the map in terms of a limited number of trend surface model coefficients.

cvu icon cvu

Connectome visualization utility

emagma-tutorial icon emagma-tutorial

A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.

enigma icon enigma

ENIGMA TOOLBOX is an open-access repository for data sharing, neuroimaging analysis, and visualization of ENIGMA datasets

ewce icon ewce

Expression Weighted Celltype Enrichment

fame icon fame

FSL-Feat Automatic Motion Extraction from Feat outputs.

fiqt icon fiqt

FDR Inverse Quantile Transformation

ggseg icon ggseg

Plotting tool for brain atlases, in ggplot

kde-for-scipy icon kde-for-scipy

A repository of code to be integrated with SciPy's KDE module

learning_connectome icon learning_connectome

Repository with code to calculate and analyse structural connectome data based on FA

multibrain icon multibrain

A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!

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