computational-genomics-bsc
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PK
Name: Computational Genomics (BSC-CNS)
Type: Organization
Bio: Computational Genomics group in Life Sciences department at Barcelona Supercomputing Center – Centro Nacional de Supercomputación (BSC-CNS)
Location: Spain
Blog: http://cg.bsc.es/cg/
Computational Genomics (BSC-CNS)'s Projects
Tool for copying read-alignments regions centered around variants (in VCF/VCF.GZ/BCF format) from existing genomes (in SAM/BAM/CRAM format) to insert them into canvas genomes (in SAM/BAM/CRAM format).
Tool for adding genomic variants to an existing genome (in SAM/BAM/CRAM format). Currently supported variants are SNVs, indels and SVs (insertions, deletions, translocations, inversions and duplications). It generates realistic genomes as almost always less than 99% of the original real genome is modified.
Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in pure Python.