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3d-rcan

Three-dimensional residual channel attention networks

affineinvariantmcmc.jl

Affine Invariant Markov Chain Monte Carlo (MCMC) Ensemble sampler

altair

Declarative statistical visualization library for Python

auto-pytorch

Automatic architecture search and hyperparameter optimization for PyTorch

awesome-vaes

A curated list of awesome work on VAEs, disentanglement, representation learning, and generative models.

ballista

Distributed compute platform implemented in Rust, and powered by Apache Arrow.

basisvae

PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders

bcm3d

bio-image_analysis_with_python

bioc2016singlecell

Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor

biomart

biostructmap

A Python package for mapping sequence aligned data onto protein structures

bqplot

Plotting library for IPython/Jupyter notebooks

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

cellprofiler

An open-source application for biological image analysis

chemview

The new generation molecular viewer for IPython notebook

commot

connectome

cptac

Python packaging for CPTAC data

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

cytotalk

A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.

datasets

Images and other data from the JUMP Cell Painting Consortium

ddmc

Predicting cell phenotype with mass spec data.

deconv_benchmark

diann

DIA-NN - a universal automated software suite for DIA proteomics data analysis.

dtaidistance

Time series distances: Dynamic Time Warping (DTW)

dwls

Gene expression deconvolution using dampened weighted least squares

edamontology

EDAM is an ontology of bioscientific data analysis and data management.

funscor

R package for functionally scoring phosphorylation sites

geoplotlib

python toolbox for visualizing geographical data and making maps