Comments (1)
tetron
commented on June 18, 2024
So if I understand what you're saying:
- Upgrading files are already at the latest version is redundant and should be skipped
- The behavior of recursively updating files is surprising
If it creates the upgraded files in the same directory without updating references, the workflow won't actually refer to the upgraded tools.
I agree it should either only upgrade one file at a time, or it should write the new files to the same relative path as the original file (and moving the original file out of the way to a backup).
from cwl-upgrader.
Related Issues (20)
- Expected <block end>, but found '<scalar>' HOT 1
- Workflow missing required 'in' and 'out' fields HOT 2
- eventually support re-writing DockerGpuRequirement
- add draft-2 to v1.x support
- Imports inside the requirements block cause cwl-upgrader to fail HOT 1
- Upgrade to v1.1 should un-prefix cwltool:InplaceInputRequirement HOT 1
- upgrade to cwl v1.1 should move Workflow level inputBindings to a label, doc, or comment
- CWL v1.1: `cwltool:loadListing` extension req into a unprefixed `LoadListingRequirement` HOT 1
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- shebang line duplicated
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- Unifying target version parameter for `upgrade_document` HOT 1
- [Feature Request] returning packed object instead of dumping to files HOT 5
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- tests: upgrade all the CWL v1.0 conformance tests and confirm the results HOT 5
- upgrading packed document → "No such file or directory: #echo"
- unicode failure on Python 3.5 HOT 1
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from cwl-upgrader.