Related Issues (20)
- installing without root HOT 13
- kquery, missing command HOT 28
- Please consider converting ExternalProject_Add to git submodules
- Puffaligner fasta file HOT 1
- [Compile error] cannot open output file cedar: Is a directory
- No executable after installing HOT 1
- Pufferfish doesn't build within a conda environment (which has all the prerequisites) due to failed build of tslib from SeqLib HOT 9
- Add description to help that pufferfish index supports gzipped FASTA reference file
- Pufferfish index `--decoys <decoy_list>` option doesn't tell you how to provide a list of FASTA files HOT 3
- Pufferfish index decoy option fixFasta doesn't recognize FASTA header(s) and fails HOT 2
- xz-5.2.2.tar.gz: FAILED HOT 2
- Output unmapped reads
- Align command fails or shows help when options aren't in a specific order HOT 1
- PuffAligner significantly slower at mapping and thread usage is much less than specified when running with `--compressedOutput` HOT 1
- Would Pufferfish index and align be more efficient if I merged each genome into a single contig and FASTA entry per genome? HOT 1
- Cedar segfaults with SAM files HOT 1
- Create and query an index of many human genomes?
- can't install pufferfish
- Fails to compile on IBM Power architecture (ppc64le)
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from pufferfish.