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awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

ble-proximity-tracing

Bluetooth Low Energy RSSI measurements with ground-truth distances.

borrelia-diagnosis-prediction-models

colabo-resources

General tools and utilities for the lab. Includes a wiki

colabo-web

colabo-web-old

CoLabo website

comokit-model

A GAMA (http://gama-platform.org) model on the assessment and comparisons of intervention policies against the CoVid19 pandemics

distance-estimation

Tests on distance estimation using Bluetooth data

ebola-care-guidelines

Prognosis models and apps derived from the Ebola IMC dataset

ebola-imc-code

Source code for the prognostic models in the paper Machine-Learning prognostic models from the 2014-16 Ebola outbreak

ebola-iterative-poc-biomarkers

ebola-pediatric-prognostic-model

ebola-predictor

Prediction pipeline to generate prognosis predictors for Ebola Virus Disease

go-mod-test

just testing internal modules and imports in go

h1n1-gama-simulations

herald-test-app

Simple Android and iOS apps to test Herald Proximity

ilm-covid19-risk

Code and data for "Individual-level Modeling of COVID-19 Epidemic Risk", preprint at https://arxiv.org/abs/2006.16761

jupyter-scatter

Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!

lassa-isth-code

lassa_randomized_data

lime

Lime: Explaining the predictions of any machine learning classifier

mumps-harvard-models

Epidemiological models for the mumps outbreak at harvard University in 2016

mumps-pomp-models

SEIR POMP models for Harvard and Ohio State University mumps outbreaks

muttomics-dashboard

oo-models

Modeling scripts for OO simulations

oo-viz

Visualization scripts for OO data

oo-wku23

Repo with the analysis of the OO-WKU simulation from 2023

pounce

POUNCE! Demo

regl-scatterplot

Scalable WebGL-based scatter plot library build with Regl

sciviewer