Comments (1)
cokelaer
commented on August 16, 2024
@johnnytam100 unfortunately, there was a big change in uniprot API recently, which has been updated in bioservices.
So you must use the new conventions. I also recommend to use the latest version (1.10.4 available on pypi https://pypi.org/project/bioservices/). Then, please check the new documentation on bioservices.readthedocs.io
The documentation may not be up-to-date everywhere though.
In your case the ACC+ID must be changed to UniProtKB_AC-ID and KEGG_ID to KEGG
You can see available mapping in the attribute:
u.valid_mapping
Where the keys contains the 'from' and the values are the 'to'.
from bioservices.
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from bioservices.