Related Issues (20)
- :sparkles: import latest Uruguayan data
- :wrench: configure database connection
- :boom: should smarter_id change its format?
- :sparkles: import latest Uruguayan data
- :sparkles: add SNPconvert.py to main src/data scripts
- :sparkles: integrate background data with published datasets
- :sparkles: check that illumina A/B alleles are tracked properly
- :sparkles: add new background datasets for goat
- :sparkles: add WGS background data for Goat HOT 1
- :sparkles: generate final genotype files for OAR4 and CHI1 assemblies
- :sparkles: track `ALT` and `REF` alleles in locations
- :card_file_box: track breeds and countries in countries and breeds collection respectively
- :sparkles: add multiple phenotypes to samples
- :sparkles: convert genotypes from top to forward
- :bug: check country for french dataset with GPS coordinates HOT 1
- :sparkles: add Croatian sheep data
- :zap: enhance genotype conversion
- :sparkles: add a script to transform PLINK into VCF and fix allele references using `bcftools`
- :sparkles: add data for Guisandesa goats
- :boom: Manage python packages with poetry
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