Comments (2)
clb21565
commented on June 2, 2024
Hey there! -p corresponds to --id setting in blastp and -q is query cover. Apologies for the confusion-- we'll be making the commands more intuitive in a future release.
RE no hits-- if you modify the -p / -q setting, you should probably see some hits. An especially low value might be warranted to detected very diverged phage sequences.
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asierFernandezP
commented on June 2, 2024
Thanks for the clarification! However, I have tried to run it lowering the thresholds (-k 10 -e 1e-10 -p 10 -q 10) and still no output is reported.
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Related Issues (14)
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