ckfaber Goto Github PK

ap_histology

Histology processing

axionfileloader

A Matlab library capable of reading Axion's RAW and SPK files.

biostats_workshop

bombcell

Automated manual curation and cell classification of spike-sorted electrophysiology data in MATLAB. Fine-tuned for kilosorted Neuropixels data.

buzcode

Buszaki lab code

cal-repository

Code to reproduce figures in "A big-data approach to understanding metabolic rate and response to obesity in laboratory mice"

cellbase

Matlab-based data base and analysis functions for neural recordings.

ecephys_spike_sorting

Modules for processing extracellular electrophysiology data from Neuropixels probes

eventtrees

explore_california

Kevin Skoglund's git tutorial exercise

fed3

Feeding Experimentation Device version 3

fed3_viz

a GUI for plotting FED3 data

fieldtrip

The MATLAB toolbox for MEG, EEG and iEEG analysis

jhustatcomputing2022

Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022

johnshopkins_datasciencecourses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

kilosort

Fast spike sorting with drift correction for up to a thousand channels

longitudinal_phenotyping

matlab_brainandcognitivescientists

Code that accompanies the book

mirzadeh_cal

mixed_anova

Storage/editing space for Mixed Anova

neural_data_science

Contains programming labs and lecture notes for the lecture "Neural Data Science"

neuropixels_trajectory_explorer

Neuropixels trajectory explorer with the Allen CCF mouse atlas

npy-matlab

Experimental code to read/write NumPy .NPY files in MATLAB

phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

probeinterface

Python package to handle probe layout, geometry and wiring to device.

pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

spike-raster-plot

A spike raster plot from spike time stamps with optional trial and group data.

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

spikes

cortex lab code for electrophysiology

spiketutorials

Tutorials for using SpikeInterface on extracellular datasets.