cjjossart's Projects
Nextflow implementation of Nextstrain's Augur pipeline
Phylogenetic analsysis of Bacillus Anthracis virulence plasmid Pxo1
Conda recipes for the bioconda channel.
Nextflow workflow for our analysis of SARS-COV-2
Config files for my GitHub profile.
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
For the final presentation
Infectious Disease Mortality and Environmental Factors
Repository to host tool-specific module files for the Nextflow DSL2 community!
This workflow prepares a reference index using BWA as part of the MycoSNP suite of workflows.
nf-core/mycosnp
This repository houses wrapper scripts for various Bioinformatics workflows.
Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.
Assembly and intrahost/low-frequency variant calling for viral samples