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chrchang avatar chrchang commented on September 25, 2024

Hmm, I was unable to reproduce this problem on a synthetic dataset with some missing genotypes. Can you check whether the problem still exists with the latest build? If so, can you send me a small dataset I can use to replicate the issue?

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ngcrawford avatar ngcrawford commented on September 25, 2024

I think it's only an issue with small datasets (e.g., ~15 individuals or less).

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chrchang avatar chrchang commented on September 25, 2024

I still wasn't able to reproduce this with an 11-sample dataset. Can you send me the dataset which is exhibiting this problem on your end?

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