chooliu Goto Github PK

ajrcmb_marijuana_rnaseq

Analysis code accompanying "Chronic marijuana use is associated with gene expression in bronchoalveolar lavage" (ATS Journals)

arjccm_marijuana_rnaseq

Chronic marijuana use is associated with gene expression in bronchoalveolar lavage

bead-normalization

bead-based normalization of mass cytometry data

boco-jail-analysis

cemba_data

Mapping pipeline for snmC-seq based technologies.

citrus

Citrus Development Code

colorado

Highlighting code & projects from #city-denver and #city-boulder.

colorado-environmental-records-scraper

tools for scraping & parsing Colorado Environmental Records HPRMWebDrawer (environmentalrecords.colorado.gov/HPRMWebDrawer).

colorado-public-data-list

a curated list of open/public data sources in Colorado.

coloradorent

The rent is too damn high in Colorado

compas-analysis

Data and analysis for 'Machine Bias'

d4d-predicting-poverty

Poverty prediction based on research out of Stanford University in Collab with members of d4d

dlpc_liver_rnaseq

Code associated with RNA-seq processing & data analysis of "LRH-1 Agonist DLPC Through STAT6 Promotes Macrophage Activation and Prevents Parenteral Nutrition Associated Cholestasis in Mice."

fastgxc

Computationally efficient and statistically powerful software for detecting context-specific eQTL effects in multi-context genomic studies.

fetallung_mirna_smokeexposure

analysis code for "Intrauterine Smoke Exposure, microRNA Expression during Human Lung Development, and Childhood Asthma"

fseoe_rnaseq

Analysis code accompanying "Fibrostenotic Eosinophilic Esophagitis phenotype is defined by a proliferative gene signature".

igvf_seqspec_staging

staging before submitting Luo Lab/UCLA custom seqspecs for IGVF

longitudinalmethyl_intermittentfasting

mirnasexdimorphismfetallung

analysis code for "Sex-Specific Differences in MicroRNA Expression during Human Fetal Lung Development"

read-this-first

Start here!

rzv_cmi_5yrpersist

Code for "Cell-Mediated Immune Responses After Administration Of The Live Or The Recombinant Zoster Vaccine: Five-Year Persistence."

seqspec

machine-readable file format for genomic library sequence and structure

snm3cseq_pipeline

bioinformatics pipeline for single-nucleus methylation & chromatin conformation capture assay (sn-m3C-seq)

snmctseq_pipeline

Luo Lab snmCT-seq bioinformatics pipeline for joint single-nucleus methylation & transcriptome profiles.

sterile_vs_latent_tb_immunity

Analysis code for "Comparative immune responses to Mycobacterium tuberculosis in individuals with latent infection or sterile protection against infection"

town-council

Tools to scrape and centralize the text of meeting agendas & minutes from local city governments.