Comments (5)
The HPRC team ran the Y2 test for both verkko and hifiasm. Let me double check with them.
from hifiasm.
Thank you. Please do let me know when you hear back.
from hifiasm.
A gentle reminder. Would it be possible to get access to the data?
from hifiasm.
Sorry for the late reply. They are at:
'''
s3://human-pangenomics/NHGRI_UCSC_panel/HG002/nanopore/ultra-long/03_08_22_R941_HG002_1_Guppy_6.1.2_5mc_cg_prom_sup.bam
s3://human-pangenomics/NHGRI_UCSC_panel/HG002/nanopore/ultra-long/03_08_22_R941_HG002_2_Guppy_6.1.2_5mc_cg_prom_sup.bam
s3://human-pangenomics/NHGRI_UCSC_panel/HG002/nanopore/ultra-long/03_08_22_R941_HG002_3_Guppy_6.1.2_5mc_cg_prom_sup.bam
from hifiasm.
Great, thank you!
Closing the issue now.
from hifiasm.
Related Issues (20)
- missing 8Mb sequences in the assembly HOT 5
- Empty haplotype 2 gfa files by ONT integration HOT 1
- Basic Question About HiFi Input HOT 3
- Spend too long times to run hifiasm HOT 4
- Switch error on X and Y chromosome HOT 2
- *.ovlp.bin file HOT 1
- Resolving switching error (?)
- Interchromosomal misjoin HOT 1
- Read error correction does not reduce the number of kmers present once, twice or three times
- Recreate p_ctg from p_utg HOT 3
- In the diploid assembly, hfiiasm identified a value that did not exist in the k-mer plot as the "homozygous read coverage threshold".
- fungi diploid assemble phasing errors
- What is the strategy for Ultra-long ONT integration? HOT 3
- No further progress after generating *bin files HOT 1
- Issues with Hexaploid Assembly
- Numerous spurious contig overlaps in assemblies HOT 1
- output GFA with J lines in scaffolding mode
- Output that maps repeat shrapnels to unitigs and to scaffolded chromsomes
- High Duplication in my Assembly...l3 (purge-dup) doesn't help much HOT 1
- How to classify hifi reads into haplotype genomes? minimap2 did not work well HOT 2
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