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actionet

ACTIONet single-cell analysis framework

afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

ai-vtuber-chatglm

本地部署chatglm生成并以语音回复你的bilibili直播弹幕 Use chatglm to generate and reply your bilibili live danmu with voice

asld

Analysis the sgRNA library distribution from Illumina pair-end sequencing data.

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

biopython

Official git repository for Biopython (converted from CVS)

biosimulator.jl

A stochastic simulation framework in Julia.

books

chenatf.github.io

clld

This program is designed to detect germline de novo large deletions at the target sites using the NGS whole genome sequence data.

coursera-ml-andrewng

use numpy, scipy, and tensorflow to implement these basic ML model and learning algorithm

crispresso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

cutadapt

cutadapt removes adapter sequences from sequencing reads

datascicomp

A collection of popular Data Science Competitions

deeplearning_ai_books

deeplearning.ai（吴恩达老师的深度学习课程笔记及资源）

fastaq

Python3 scripts to manipulate FASTA and FASTQ files

gacd_project

gatk-protected

Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

machine-learning-notes

My continuously updated Machine Learning, Probabilistic Models and Deep Learning notes and demos (1000+ slides) 我不间断更新的机器学习，概率模型和深度学习的讲义(1000+页)和视频链接

minesweeper

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

pda_book

Code Examples Data Science using Python

plate_scatac-seq

A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pydata-cookbook

PyData Cookbook Project

pyfaidx

Efficient pythonic random access to fasta subsequences

python3-cookbook

《Python Cookbook》 3rd Edition Translation

pythondocument

translate python documents to Chinese for convenient reference 简而言之，这里用来存放那些Python文档君们，并且尽力将其翻译成中文~~

pyvcf

A Variant Call Format reader for Python.