chaochaowong Goto Github PK

bc-data-science-gcp

book club labs

canfam3.duxfamily

Processed RNA-seq, documentation of the bioinformatics analysis and reproducible code for DUXC expression and functions in canine myoblast

countrepeats

Tools to count hits for repeat elements and enrichment/depletion analysis, and visualization. This package is a replacement of the rmskStats package.

data-science-on-gcp

Source code accompanying book: Data Science on the Google Cloud Platform, Valliappa Lakshmanan, O'Reilly 2017

datadrivencv

R package for building customizable CVs from spreadsheets

datadrivencv-cjwong

domaincalling

Tools to call large binding domains from CutAndRun-seq or to identify long non-coding RNA transcripts from RNA-seq

dux4-activated-dsrnas

Tools and scripts supporting the analysis of peer-reviewed paper by Sean Shadle et. al. - DUX4 activates double stranded RNAs derived from pericentric human satellite II repeats.

dux4familygenenetwork

estimategenomicoverlaps

fshd-biopsy-rna-seq

Preprocessing pipeline and analysis codes for FSHD-Biopsy RNA-seq data

hg38

Tools to build TxDb and EnsDb packages of genome build hg38

made-mistakes-jekyll

:ghost: Source for my website and blog (Jekyll + Gulp + Travis CI)

peakable

peakable provides tools for peak call QC for CUT&RUN and CUT&Tag-seq, importing/exporting MACS2 or SEACR peak files, and downstream analysis.

pocketbase-app

Web application for the backend pocketbase service for Sarthy Lab

pocketbase-aws

Infrastructure code to prepare AWS resources and deploy a Pocketbase instance

remembermike.io

rmskstats

Tools to count repeat elements form RepeatMasker (RMSK) and infer the enrichment of repeats

seqpipelinetools

Preprocessing, variants tools for RNA-seq, ChIP-seq analysis

tidynoddy

Make sample sheet for Nextflow CUT&RUN and CUT&Tag pipleine

ucsctracktools

Tools to make coverage or junction files (*.bed, *.bedGraph, *.bigWig) for RNA-seq and ChIP-seq data

wellstone_bilateral_biopsy