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afpap

AlphaFold-based Protein Analysis Pipeline

ampliseq

16S rRNA amplicon sequencing analysis workflow using QIIME2

awesome-deep-learning-papers

The most cited deep learning papers

awesome-multi-omics

List of software packages for multi-omics analysis

bbplot

Grammar of Graphics for base plot

benchdamic

Benchmark of differential abundance methods on microbiome data

bioconductor-workshop-2

biotools

A list of useful bioinformatics resources

chip-ap

An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis

cloud-bind

Cloud-based Drug Binding Structure Prediction

comparison_of_da_microbiome_methods

csvtk

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

dsbook

Repository for data science book

gget

gget enables efficient querying of genomic databases, such as Ensembl, UniProt, NCBI, directly into a Python or terminal programming environment. It was designed to support genomic data analysis.

gorilla

Gorilla: An API store for LLMs

gpt_academic

为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

idep

Integrated Differential Expression and Pathway analysis

immunarch

🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

jupyter_dock

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

kraken2_classification

Snakemake workflow for metagenomic classification with Kraken2

llama-gpt

A self-hosted, offline, ChatGPT-like chatbot. Powered by Llama 2. 100% private, with no data leaving your device.

making-it-rain

Cloud-based molecular simulations for everyone

metabcomparisonbinaryml

https://cimcb.github.io/MetabComparisonBinaryML/

metabprojectionviz

https://cimcb.github.io/MetabProjectionViz/

metagenomics_tools

neatseq-flow-modules

Shared Modules and Workflows for NeatSeq-Flow

nipype_tutorial

Learn Nipype with these tutorial notebooks - go here to see them online -->

omix

A Multi-Omics Integration Pipeline

ordinalvs

High-dimensional variable selection for ordinal outcomes with error control

parametrizani

Dihedral Parametrization in the Cloud with TorchANI