cgroza Goto Github PK

arxiv-latex-cleaner

arXiv LaTeX Cleaner: Easily clean the LaTeX code of your paper to submit to arXiv

bamfasta

Replace FASTA intervals with the sequence of aligned reads from SAM/BAM.

bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

barcodeasm

bifrost_jaccard

Compute jaccard similarity matrix between colors in a bifrost compacted colored de Bruijn graph.

biomorph

Biomorph program written in Java that aims to simulate evolution by mutation and natural selection with polygons and a turn function.

cgroza.github.io

clj-chess-sumamry

Creates summaries of chess games.

cljgfa

Clojure parser for GFA2 format.

comp-551-p3

comp303_minis

comp551_p1

comp551_p2

comp551_p4

comp598-twas-prs

comp598_proj

convolutiondrugclassifier

Convolutional neural network drug classifer.

crossmap

CrossMap is a python program to lift over genome coordinates from one genome version to another.

dotfiles

emacs-apt

Apt packager interface for emacs.

evil-html-mode

Spacemacs confguration layer that adds spacemacs style bindings to Emacs' HTML-mode.

gcloud_nextflow

Nextflow pipeline for SURVIVOR.

gecrit

gEcrit is a Python IDE. Its focus is on simplicity and ease of use. It is fast and lightweight. It features Python indentation, line numbers, code folding, syntax highlighting, shell access, code completion, a program runner, a source browser, indentation guides, a white space indicator, autosaving, an edge line, multiple tabs, printing, jumping to a specific line, word searching, word replacement, zooming undo/redo, pastebin.com code submission, Python syntax checking, the ability to change the indentation of many lines at once, autocompletiton,file tree browser,and bad brace checking.

goodreads-clj

Goodreads API wrapper for Clojure.

graffite

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

graph_peak_caller

ChIP-seq peak caller for reads mapped to a graph-based reference genome

hifiasm_nextflow

hsregex

Haskell regular expresion engine.

ku_tutorial_2023

lensesmanager

Tool for managing Unity Lenses.