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afterqc

awesome-python-cn

Python资源大全中文版，包括：Web框架、网络爬虫、模板引擎、数据库、数据可视化、图片处理等，由伯乐在线持续更新。

barcseek

BarcSeek: A Flexible Barcode Partitioning Tool for Demultiplexing Genomic Sequencing Data

bio-tool

biostar-handbook

biostar-tutorials

bwa

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

cez026.github.io

cnvkit

Copy number variant detection from targeted DNA sequencing

coevo_analysis_pypackage

Python package for manipulating alignments and structures for coevolution analyses

coevo_tools

dada2

datacarpentry

dca

dca-1

Stores code to implement Direct Coupling Analysis (DCA)

dca-test

deep_sequencing_analysis

Software used for data analysis

deeptools

Tools to process and analyze deep sequencing data.

dms_tools2

software for the analysis and visualization of deep mutational scanning data

enrich2

fastaq

Python3 scripts to manipulate FASTA and FASTQ files

frogs

FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.

https-github.com-lh3-bioawk

infcalc

infCalc.py is simple tool that calculates various information-based statistics for pairs of columns between two protein alignments.

mefit

Merging and Filtering Tool

mergereads

Create NNN joined reads from Paired end reads

miseq-analysis

ngs

Scripts for next generation sequencing

notebook