cellprofiling Goto Github PK

auto-sample-prep

Collect code for automatic sample preparation.

auto_acq

This project means to automate confocal image acquisition.

bioe-postdoc-chalktalk

Website for the BioE Postdoc Chalk Talk

bioloaders

A repository of dataset objects for common datatypes in bio sciences.

cam_acq

Python project to control microscope through client-server program.

camacq-plugins

Plugins for camacq

cell-pro-template

This repository serves only as a Python template for new projects

cellcycleplottingdataframes

Dataframes for plotting the cell cycle data

cellpro-imjoy-plugins

ImJoy Plugins for the Cell Profiling Group.

cellprofiling.github.io

covid-models

covid19ai.io

COVID19AI.IO -- An AI Model Repository for Fighting COVID-19

cpias

:herb: Cell Profiling Image Analysis Server

cyto-challenge

densenet

docker_pytorch_extended

Uses the pytorch docker image to build an extended image with jupyter notebook, and some other python utils

ell_code_template

featureextraction

This code extracts SLF quantitative image features for fluorescent microscopy images. This code was a collaboration between Murphy lab (murphylab.web.cmu.edu) and the HPA Cell Atlas (proteinatlas.org/humancell). Explanations for SLF features can be found here (murphylab.web.cmu.edu/services/SLF/features.html).

fuccisinglecellseqpipeline

Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model -- RNA-Seq analysis pipeline

hdca-fetallung-spatialproteomics

Custom software written for analysis of spatial proteomics data from fetal lung acquired in the HDCA project.

hpa-cell-segmentation

hpa-competition

Human Protein Atlas image classification competition

hpa-competition-solutions

Team original solutions for the Human Protein Atlas image classification competition

hpa-model-bestfitting

hpa-model-template

This is a project template for submitting models to the HPA Model Zoo

hpa-model-zoo

A collection of deep learning models for analyzing the Human Protein Atlas images.

hpa-special-prize

code needed to run the HPA special prize

hpa-umap-explorer

Exploring HPA Cell Atlas with a UMAP generated from a deep learning model for protein pattern classification

hpa_densenet

Running the Bestfitting Densenet model

image_processing_and_segmentation