ccdmb Goto Github PK
Name: CCDM Bioinformatics
Type: Organization
Blog: https://ccdmb.github.io
Name: CCDM Bioinformatics
Type: Organization
Blog: https://ccdmb.github.io
Code accompanying an upcoming manuscript on a P. nodorum pangenome.
RNA-seq analysis of barley double haploid (DH) lines from Baudin / Eth069 cross during powdery mildew disease
Barley Baudin and Palace NIL RNAseq analysis during powdery mildew infection
A package to cluster and visualise MS/MS spectral data
CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.
Easily run the CATAStrophy classifier on many genomes.
Front page for the CCDM bioinformatics group.
🌱 Toolkit for long reads RNAseq data analysis
A small pipeline for assembling mitochondrial genomes and filtering reads prior to assembly.
A nextflow pipeline to run the mummer pipelines (align genomes, call snps) and process outputs into sane formats.
Pipelines for gene and TE annotation of pangenomes.
A pipeline for predicting and masking transposable elements in multiple genomes.
PathoPore - Longer Sequences and NextFlow Faster Analysis
A nextflow pipeline to cluster sets of proteins.
QC and tidying on assembled genomes.
Effector prediction pipeline based on protein properties.
Datasets used for developing the predector pipeline
Utilities for running the predector pipeline.
PTR gene analysis for race 2 and 4 isolates PacBio sequenced
Perform basic QC on illumina data
:white_check_mark: :rotating_light: QC and alignement pipeline for RNA-seq reads
Example templates for bioinformatics analyses
SLURM script collection
A nextflow pipeline to run phylogenetic analyses using SNPs
RNA-seq analysis of wheat AGR during tan spot infection
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.