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awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

basset

Convolutional neural network analysis for predicting DNA sequence activity.

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bio609_2018

bio609_2019

Introduction to UNIX/Linux and Bash Scripting

bio609_2020

Unix/Linux & Bash Scripting course - UZH

bio609_2021

bio634_2018

bio634_2019

BIO634 Next-Generation Sequencing 2 – Transcriptomes, Variant Calling and Biological Interpretation

bio634_2020

bio634_2021

NGS lvl2 Course - Transcriptomics, variant calling, and biological interpretation.

bioconda-recipes

Conda recipes for the bioconda channel.

cmplot

📊 Circular and Rectangular Manhattan Plot

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

gtex-pipeline

GTEx & TOPMed data production and analysis pipelines

gtex-viz

GTEx Visualizations

hello-friend

Testing

msa

Modular BioJS compoment for a multiple sequence alignment

pybam

Very simple, pure python, BAM file reader

rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

seaborn-data

Data repository for seaborn examples

snakefiles

:snake: Snakefiles for common RNA-seq data analysis workflows.

urpp2019

Bioinformatic tutorials 2019 - URPP "Evolution in action"

urpp_tutorials

UZH Bioinformatic courses 2018 (Evolution in action)