cariaso Goto Github PK

bcbio-nextgen-vm

Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines

bioblend

A python library for interacting with CloudMan and Galaxy API

biopython

My personal branch of Biopython

biopythonabitracer

This was supposed to be a fork of Cariaso/Biopython. However, my computer failed to synch. Nevertheless, here are the updated files.

boto

Python interface to Amazon Web Services

cariaso

Automatically exported from code.google.com/p/cariaso

circoswikiwalker

https://docs.google.com/present/edit?id=0ASx0fqaSeLD1YWprdGptaGY4YnNwXzIwMDZnZ21oNnRkeA

computational_medicine_1

Understanding how to index and use complex variants to more precisely categorize disease

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

cyrius

A tool to genotype CYP2D6 with WGS data

dna

Suggested edits to the Manu Sporny genome.

elastic-flask-baseline

A baseline Flask + FPS application suitable for use on Amazon Elastic Beanstalk.

eutils

flask-security

Quick and simple security for Flask applications

flask-user

Customizable User Authorization and Management for Flask: Register, Confirm email, Login, Change username, Change password, Forgot password and more.

flickr-download

Tool for downloading sets and photos from Flickr

hla

xHLA: Fast and accurate HLA typing from short read sequence data

hvac

:lock: Python 2/3 client for HashiCorp Vault

locals3repo

MediaWiki S3 and CloudFront Extension

mediawiki-extensions-googletagmanager

Github mirror of MediaWiki extension GoogleTagManager - our actual code is hosted with Gerrit (please see https://www.mediawiki.org/wiki/Developer_access for contributing

metapub

Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.

mpiblast-build

Automatically exported from code.google.com/p/mpiblast-build

multiloc2

subcellular protein localization prediction

mwclient

mwclient is a Python framework to interface with the MediaWiki API.

octopus

Bayesian haplotype-based mutation calling

oligorl

A Reinforcement Learning Framework for Pooled Oligonucleotide Design

open-cravat

A modular annotation tool for genomic variants

paper-qa

LLM Chain for answering questions from documents with citations

pta

tools used for somerset es pta work

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.