cardiacmodelling Goto Github PK

.github

.github special repo for organisation level readme file

action-potential-experimental-design

Experimental design for calibrating action potential models.

ap-nimbus

Cardiac modelling in containers

ap-nimbus-app-manager

API for cloudified AP Predict

ap-nimbus-azure-durable-functions

Azure Durable Functions for AP-nimbus

ap-nimbus-client

ap-nimbus-datastore

ap-nimbus-deploy

appredict

Cardiac Action Potential Prediction (ApPredict) under drug-induced block of ion channels. This is a Chaste extension/bolt-on project.

appredict-docker

atriallowk

Effect on low external K on atrial myocytes via IK1 and INaK

bennevis

"Where is Ben Nevis" presents the landscape of Great Britain as a testbed for optimisation and sampling methods.

cellml-repo-updates

Adding or updating models in the CellML model repository

covid19-data-current

cside-2018

Code for the Glasgow CSide 2018 cardiac fitting competition https://www.gla.ac.uk/schools/mathematicsstatistics/events/conferences/cside2018/models/model1/

eadpredict

Code to reproduce the results in the paper "Early afterdepolarisation tendency as a simulated pro-arrhythmic risk indicator"

empirical_quantification_of_model_discrepancy

ericsummer2022

fickleheart-method-tutorials

Code for the tutorials in the Fickle Heart model calibration with discrepancy 2020 paper.

fitting-notebooks

Examples of parameter estimation in cardiac cell electrophysiology using Myokit and PINTS.

fitting-with-derivatives-cinc

Code for the CINC paper "Derivative-based Inference for Cell and Channel Electrophysiology Models"

fourwaysoffitting

Code to compare four different ways to fit an ion current model

gamma_0

Code associated with a publication on the action potential model parameter representing missing charge

glycan-counter

Scripts for counting glycans in images

herg-binding-mechanisms

Source code and data for reproducing "The impact of uncertainty in hERG binding mechanism on in silico predictions of drug-induced proarrhythmic risk".

hergmodels

hergrapidcharacterisation

Rapid characterisation of hERG channel kinetics

ical-model-review

ionbench

A benchmarking tool for comparing different parameter optimization algorithms for ion channel models

l-type-ca-rundown-experiments

An investigation of rundown in automated patch clamp L-type calcium current