canales-aguirrecb Goto Github PK

admixture_pie_chart_map_tutorial

Tutorial for visualising admixture on a map

admixturepipeline

A pipeline that accepts a VCF file to run through Admixture

bayesass3-snps

Modification of BayesAss 3.0.4 to allow handling of large SNP datasets

clases

cmplot

📊 Circular and Rectangular Manhattan Plot

construct

method for modeling continuous and discrete population genetic structure

dartr

Importing and Analysing DArT type snp and silicodart data

dartseq_code

In-progress scripts for DArTseq processing and analysis

dartseq_pipeline

Scripts for DArTseq_pipeline

dsuite

Fast calculation of Paterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species

easyparallel

ferrada-fuentes_etal_2023_fishes

Data microsatellite of Trachurus murphyi used in the article Ferrada-Fuentes et al. (2023) published in Fishes

fsthet-1

:exclamation: This is a read-only mirror of the CRAN R package repository. fsthet — Fst-Heterozygosity Smoothed Quantiles

genotype_plot

A set of functions to visualise genotypes based on a VCF

ggcoverage

Visualize and annotate genomic coverage with ggplot2

ggman

R package to create manhattan plots using ggplot

langen_pipeline

Suit of R-scripts to perform landscape genomic analyses

ldjump

R Package to Estimate Variable Recombination Rates using Population Genetic Data

lecluvindex

Chilean UV index plugin for the Le bot.

lositan

Lositan/Mcheza selection detection workbench

mapping_tutorial

marmap

Import, plot and analyze bathymetric and topographic data

mitoz

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

oneliners

Useful bash one-liners for bioinformatics.

outlierfst

physalia-lcwgs

Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 11-14, 2021

phytools

popgen-notes

Population genetics notes

primer3

Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).

redlistmanipulatr

redlistManipulatr collects a group of functions used to pull and manipulate IUCN Red List habitat and elevation data