Related Issues (20)
- Suggestion: multithread HOT 1
- ncbi path variable not carried forward? HOT 5
- get_seeds_local() compares strings instead of numbers HOT 1
- Use of `paste0()` for file paths, can/should use `file.path()`
- consistent use of packages
- Improve `run_primer_blastn()` + ncbi_bin parameter
- Referencing magrittr::`%>%` pipe in functions HOT 1
- Address `check()` issues
- Consistent use of text output formats - csv, tsv
- Simplify logic in `blast_datatable` -> `run_blastdbcmd_blastn_and_aggregate_resuts()`
- update examples HOT 1
- clean/document modifiedPrimerTreeFunctions.R
- A `set.seed()` in randomisation functions e.g. species blast HOT 1
- Add `Remotes` in description files for github repo files
- ReadMe install pointing to old github repo HOT 1
- NCBI download code HOT 1
- Default evalue for run_primer_blastn is 3e+07 HOT 2
- Readme error
- Length of sequence headers after derep and clean
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