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anvil_docker

AnVIL Docker images for the Bioconductor project

atacworks

Deep learning based processing of Atac-seq data

bc_osc_jupyter

Batch Connect - OSC Jupyter Notebook Server

bc_osc_rstudio_server

Batch Connect - OSC RStudio Server

brca_cell_atlas

Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".

bs831

Course Materials for Genomics Data Mining

chroma

A generative model for programmable protein design

colabfold

Making Protein folding accessible to all!

coronary-progenitor-scrnaseq

docs.hpc.sjtu.edu.cn

SJTU HPC 用户文档站点

epic

Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.

gpt_academic

为ChatGPT/GLM提供图形交互界面，特别优化论文阅读润色体验，模块化设计支持自定义快捷按钮&函数插件，支持代码块表格显示，Tex公式双显示，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持清华chatglm等本地模型。兼容复旦MOSS, llama, rwkv, 盘古, newbing, claude等

hpc-toolset-tutorial

Tutorial for installing Open XDMoD, OnDemand, & ColdFront

infercnvngchm

inferCNV interface to using NGCHM next generation heat maps

iobr

IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

juliacll

julia for chinese user.

luca

Single-cell Lung Cancer Atlas with 1.2M cells

movics

Multi-Omics integration and VIsualization in Cancer Subtyping

msoftimigp

This includes all codes used in TimiGP manuscript

mydata

ncomms_nsclc_scfibs

Code Associated with the Nature Communications Publication entitled "Single-cell analysis reveals prognostic fibroblast subpopulations linked to molecular and immunological subtypes of lung cancer"

ngchmr

An R library for creating Next-Generation Clustered Heat Maps (NG-CHM)

ood-compose

Docker compose to bring up Open OnDemand with SLURM, Centos 7

paper-code

Repository containing the R-code used in analyses for publications.

paper-code1

Illustrative R-code used in publications.

rapids-single-cell-examples

Examples of single-cell genomic analysis accelerated with RAPIDS

scmetabolism

Quantifying metabolism activity at the single-cell resolution

scp

SCP provides a comprehensive set of tools for single cell data processing and downstream analysis.

seurat-data

Dataset distribution for Seurat

seurat-wrappers

Community-provided extensions to Seurat