Comments (4)
KimBioInfoStudio
commented on May 29, 2024
hi, which platform did u using ? and what s the cpu model name ? and how much memory did it have?
should u split raw data a small piece and try if pass maybe case by out of memory error I think
btw, bwa-mem2 need more memory than bwa-mem
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asmlgkj
commented on May 29, 2024
I use centos.
it has 126G memory
cpu model name: Intel(R) Xeon(R) CPU E5-2697 v2 @ 2.70GHz.
I think the memory is enough.
thanks a lot
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yuk12
commented on May 29, 2024
@asmlgkj could you try with the latest commit and let us know.
Thanks.
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asmlgkj
commented on May 29, 2024
@yuk12
Thanks a lot. I pulled the latest commit, it is ok now
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Related Issues (20)
- Precompiled AVX512 binary not working for Zen 4 Genoa HOT 7
- Allocation of 40.69 GB for suffix_array failed. HOT 4
- Mapping quality: bad and normal HOT 1
- Index building error
- Read group tag RG:Z for every read is missing HOT 2
- Question regarding the mismatch penalty -B
- Update paths in bwa-mem2-lisa
- Tag New Release HOT 6
- Difference in mapping quality and alignment for bwa mem2 compared to bwa mem HOT 5
- Is bwa really haplotype aware in non-human?
- error while index building HOT 1
- BWA-MEM2-LISA crashed with code 139 HOT 3
- [Question] How to install bwa-mem2-lisa
- Problems creating index with bwa-mem2 HOT 1
- MacOS M2 chip support
- Segmentation fault with valle-inclan dataset - bwa-mem2 2.2.1 avx512bw HOT 1
- bwa and bwa-mem2 relative indexing memory usage HOT 2
- Segmentation fault using bwa-mem2:2.2.1--hd03093a_5 HOT 7
- Add option to align multiple .fastq files at once? HOT 2
- Erroring during install
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