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I'm Chris @buswinka, a PhD Candidate at Harvard Medical School, Mass Eye and Ear interested in inner ear biology and deep learning, specifically the application of novel 3D instance segmentation algorithms to explore mitochondria morphology from focused ion beam scanning electron microscopy (FIB-SEM) micrographs of sensory hair cells.

Chris Buswinka's Projects

bism icon bism

Biomedical Image Segmentation Models

hcat-data icon hcat-data

Tools and Data behind the Hair Cell Analysis Toolbox (HCAT)

lsd_pure_torch icon lsd_pure_torch

Local Shape Descriptors For Neuron Segmentation, but only pytorch.

piefs icon piefs

Python Instance (map) Eikonal Function Solver

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SKeleton Oriented ObjecT Segmentation (SKOOTS) - instance segmentation of large, densely packed objects in biomedical images

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