buschlab Goto Github PK

2020_population_genetics

2022_canine_atopic_dermatitis_paper

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

bam-matcher

bamsnap

cbioportal

cBioPortal for Cancer Genomics

cbioportal-core

Legacy cBioPortal Core

cbioportal-frontend

React Frontend of cBioPortal :tada:

cbioportal-tools

copynumber

egyptref

Scripts and pipelines used in the generation of "An Egyptian Genome Reference"

fhirspark

howtos

Manuals and examples

lied_egypt_genome

miracum-pipe

Whole exome sequencing pipeline including advanced variant annotation features and automated PDF reporting.

miracum-pipe-singularity

MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of the pipeline running inside a singularity container.

mtb-cbioportal

cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of cBioPortal used in the PM4Onco use case of the Medical Informatics Initiative Germany.

mtbexporter

mtbimporter

Fully automated data import tool for cBioPortal (https://github.com/cbioportal/cbioportal). Best deployed with MTB-cBioPortal (https://github.com/buschlab/MTB-cbioportal) and MIRACUM-Pipe (https://github.com/AG-Boerries/MIRACUM-Pipe-docker).

ngs-tools-and-scripts

ngs_tools

Collection of tools for next generation sequencing analysis

sequenza

:exclamation: This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homepage: https://sequenzatools.bitbucket.io, Mailing list: https://groups.google.com/forum/#!forum/sequenza-user-group Report bugs for this package: https://bitbucket.org/sequenzatools/sequenza/issues

tf_enrichment_analysis

COVIDomics paper: Transcription factor activity network

usefulstuff

Collection of useful links

vep

Recipe for VEP + Cache