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Leo Goodstadt's Projects

cache-ensembl icon cache-ensembl

Automatically exported from code.google.com/p/cache-ensembl

gtf-to-genes icon gtf-to-genes

Automatically exported from code.google.com/p/gtf-to-genes

hmmoc-bfloat-algebra icon hmmoc-bfloat-algebra

A tiny C++ library supplying the Algebra<> template, for polymorphic representation of non-negative floating-point values in either native (eg double), log-transformed, or BFloat representations. BFloat is the Buoyant Float type, allowing fixed-precision representation at an arbitrary precision range. The library is based on code from: Lunter G. HMMoC—a compiler for hidden Markov models. Bioinformatics (2007) 23(18): 2485-2487. The code was derived by Ian Holmes and Gerton Lunter from Holmes I, Rubin GM. An expectation maximization algorithm for training hidden substitution models. J Mol Biol. 2002 Apr 12;317(5):753-64. You may use at will, subject to the license, but *please cite those two papers* in your academic publications associated with uses of this library. Thank you!

hts-waterworks icon hts-waterworks

A Ruffus pipeline for Analysis of High-Throughput Sequencing data

nested-dict icon nested-dict

nested_dict provides python dictionaries with multiple levels of nested-ness

nextclip icon nextclip

Nextera Long Mate Pair analysis and processing tool

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