Streamlining clinical bioinformatics workflows in production environments.
brwnj Goto Github PK
Name: Joe Brown
Type: User
Company: Labcorp
Location: Portland, OR
Name: Joe Brown
Type: User
Company: Labcorp
Location: Portland, OR
Streamlining clinical bioinformatics workflows in production environments.
Command line interface for Amazon Glacier
RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
NextSeq specific bcl2fastq2 wrapper.
mybinder.org - open testing.
The Biological Observation Matrix (BIOM) Format Project
Download Blast databases from ftp.ncbi.nlm.nih.gov/blast/db, validate, and extract.
Python interface to Amazon Web Services
a single binary with many useful genomics subtools.
A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.
A cookiecutter template for Snakemake workflows
simple coverage distribution profile of aligned samples. useful for sequencing center feedback and topoffs.
Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification of environmental marker genes from sequencing-based community profiling studies.
Version 2 of the Density Estimation Tool for Enzyme ClassificaTion: scripts for enzyme annotation and pipeline for making the DETECT database
.files, including ~/.osx — sensible hacker defaults for OS X
nextflow implementation of the facets data flow.
Quickly alter the headers of a manageable number of fasta entries using a CSV.
Squared distance for anchored alignment joiner of ea-utils.
Demultiplexes a fastq.
Simple FASTQ quality assessment using Python
Extensible quality control dashboard built around FASTQ assessment.
a better freebayes-parallel
demultiplex into groups (subsets) rather than individual sample files, by barcode
conda recipes for genomic data
:octocat: GitHub VS Code Theme for iTerm
JGI Genome Portal Downloader: facilitating downloads via XML
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.