brody-lab Goto Github PK

accumulation-model

Code for forward and backwards analytical solution to a drift diffusion advection model with pulse-based evidence

adrian_striatum_analysis

code for wrangling and organizing striatum ephys recordings and associated GLM fits

bl_pipeline_python

Python Data pipeline for BrodyLab

boydmeredith_bings_model_demo

boydmeredith_githubworkflow_tipsandtricks

boydmeredith_training_report

GUI to monitor performance with training on PBups pipeline

bpod_portarray_firmware

Firmware for Bpod port array module

bpod_public

Bpod firmware, hardware, and software for public sharing

brody-lab.github.io

This the lab wiki

brunton_dataset

carlos_lowrank_inference_valente_ostojic

Fitting low-rank RNNs to neural trajectories (LINT method).

chronic_neuropixels

Repository of code, data and CAD files associated with Luo*, Bondy* et al (2020). "An approach for long-term, multi-probe Neuropixels recordings in unrestrained rats"

datajoint-tutorials

Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

depasquale-elife-2023

Data and analysis notebooks for DePasquale et. al eLife 2023 submission

dynamic_ephys

Code for analysis for ephys data on the dynamic clicks accumulation task

emilyjandennis_pra

experport_public

public facing ExperPort code

flexible_decision_making_rats

flexible_decision_making_rnn

flexible_decision_making_training

Training code for the rat flexible decision-making task

jbreda_animal_training

Repository for the ingestion, cleaning and visualization of behavioral experiments

jbreda_kilosort

Pipeline that allows for tetrode recordings to be sorted in Kilosort

jbreda_pwm_mpfc_analysis

repository for analysis of PWM ephys data

jrclust

JRCLUST

kilosort2

Fast spike sorting with drift correction for up to a thousand channels

labwide_princeton_covid_dashboard

plots of the Princeton COVID Dashboad

mixtureagentsmodels

neu_437_public

Public-facing repository for NEU 437 problem sets. Includes python notebooks (without answers) and associated data.

neuroglm

Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).

proanti

Code repository for the Duan, Pagan, Piet et al. manuscript