Comments (1)
Yes! Try out this method in python: (tables
refers to the PyTables package)
import tables
with tables.open_file(filename, 'r') as f:
print(f)
z = getattr(f.root.background_removed, 'latent_gene_encoding').read()
At this point, the variable z
is the (cell, z_dim) low-dimensional representation.
There's a bit more here:
https://cellbender.readthedocs.io/en/latest/getting_started/remove_background/index.html#use-latent-gene-expression-in-downstream-analyses
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